RNA id: TU16604



Basic Information


Item Value
RNA id TU16604
length 671
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G11186
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11448763 ~ 11449433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGTTTGGTCATGTCCTCCGAGGACTGCCCCTGAAGATTTACTGTGTAGTCTCTGGGTCTGTATTTCTTCCGCTTTTTGCCTTCCGAGTTGGAGGTGGCTCCCTCCCTCTCGCCCTTGGTCTCCGCTCCCTCCAAGCTGTGTGTGGCGAGCGGGGAGTCGGAGAGCGGCTCCAGTGTTGCAGTGCTGTTTGGGGGCTGGGAGAGTCTATCCGTCGATCTGTGCAAGTGCATCGAGCCTTCCAGCCCCACAGATGACGGGCCGTCGCTGATGCACTCCTGGGCCGGCGACGTTAAAGGCTGCAGCGTGGGCAAAGGAGAGGGCACTTGGGCTGAATTCTGAGCCGGGCTCGAGAGAGTCCCTTTTGGTGCATATGTCGAAGACCTCTTGGCCATCGTCTCGTGCGTTACGCTGCGCGGACTCGAGGAGTAGCGGGGGCTTTTGGGCTGATGCTGCCCGCCTCCATCCATTCTCGCATGCTGCTGTAACACTGATGTTTTGAGTAAGGAGGAAGTGCTAGGTAGTTTGGTAAGCCCCGGAGAGCTCGGATGAGGCTTCACAGCGTTGACAGGAATTTTGTTGTGCCTGTCATTCTCAAGATGTTCCATGCGGATTCTGTCAGATGGTACGTCATCATCTTTATCCAGGAGTGGCTCAGGGCTCCCCCTAATTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16597 lncRNA upstream 202 11446512 ~ 11448561 (+) True G11179
TU16596 lncRNA upstream 4192 11422159 ~ 11444571 (+) True rps28
TU16595 lncRNA upstream 25174 11422159 ~ 11423589 (+) False rps28
TU16594 lncRNA upstream 39677 11408632 ~ 11409086 (+) True G11177
TU16583 lncRNA upstream 56093 11343771 ~ 11392670 (+) True G11170
TU16607 lncRNA downstream 4138 11453571 ~ 11454111 (+) True G11189
TU16608 lncRNA downstream 4825 11454258 ~ 11455408 (+) True G11190
TU16609 lncRNA downstream 6893 11456326 ~ 11456864 (+) True G11191
TU16616 lncRNA downstream 50956 11500389 ~ 11501586 (+) False mast3a
TU16626 lncRNA downstream 159818 11609251 ~ 11613566 (+) True LOC122328936
XM_043217489.1 mRNA upstream 10046 11433089 ~ 11438717 (+) True angptl4
XM_043256208.1 mRNA upstream 25460 11422090 ~ 11423303 (+) False rps28
XM_043256200.1 mRNA upstream 25460 11422090 ~ 11423303 (+) False rps28
XM_043258074.1 mRNA upstream 81112 11360349 ~ 11367651 (+) False nr2f6a
XM_043262715.1 mRNA downstream 32671 11482104 ~ 11507704 (+) True mast3a
XM_043264008.1 mRNA downstream 59279 11508712 ~ 11535896 (+) True pik3r2
XM_043264015.1 mRNA downstream 61867 11511300 ~ 11535896 (+) False pik3r2
XM_043264027.1 mRNA downstream 87532 11536965 ~ 11538807 (+) True ifi30
XM_043264040.1 mRNA downstream 89516 11538949 ~ 11540984 (+) True mpv17l2
TU16565 other upstream 107652 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 191999 11240126 ~ 11256764 (+) False kcnh2a
TU16308 other upstream 730569 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1531902 9911628 ~ 9916861 (+) True znf414
TU16613 other downstream 46927 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 46927 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 52969 11502402 ~ 11505730 (+) False mast3a
XR_006252734.1 other downstream 458640 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 830478 12279911 ~ 12280014 (+) True LOC122328992

Expression Profile