RNA id: XM_043224954.1


Basic Information

Item Value
RNA id XM_043224954.1
length 3331
RNA type mRNA
GC content 0.50
exon number 25
gene id hltf
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11592441 ~ 11614938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattttcgtATGTGTGTGGCCCCCGCTCCAACTCAGTAGGTGGTGATGAAGCGCTTTACTGTTGGCGCAAAAAGCTGAGGAGGAAGTAGCGTGTCGTTTCAAAACATTCGCGGCACTGACAGACGCGACCGAGACCGAGACCGAGACCGGTCGTCAAGATTTGACATAGCCTGTGGACTAAAATAAAGCCGCAGAGCGCTGCACTGTTAACCGCTCTCGCAGAATTTGTCTTCAGGCGGGTTTTCAGCACGCTTTTGCCGCAGAGGAGTCTAACCGGGAGAACAGAGTGGCACAGTCCAGctcgtgtttgtgtttgtgttttgatcGCAGCCATGCAGTCCCCAAACATCAATCCCCGCCCTGCTGCTCCGCCACGATACGCCCTCGTGGACTTCCTGGATGTGGGCGGCGCGACGAGCATATCCCAAGAAATAGCTCGTTTAACGGAGGAGTCGGGGCAGGACCTTCCGGAGGAGAATGTTCAGATCGGATCAATTCAAGGCACGGTTGTTGGTCTGCGCTACTACACTGGAACGGTCAATAGAGGAGAGATGGTGTCCCTGGTGAGGCAGCCGCAGAATCCCTATGACCGAAACGCAGTGATGGTGGCCAATGTGTATGGAAGTCAGGTGGGACACATCAAGAAAGAGCTGGCAGCTCCAATGGCCTACATTATGGACAACAAGCTGGCCAGGGTGGAAGGGGTCGTGCCGTACGGAGAGACGAATAAGTTTTCGATGCCGGTAATCCTCACCTTCTGGGGCAAAGAGGAGAACCGAGAAGCTGTGCATAATCAGATGAGACGCCACGGTTTCAAACTTGGCGCTGAGCTCAAAGGATACGCGACACAAAAATCATTGGGTAGAGACTCCCTCGGCTTGTCCTCAAAAATGAGTGCCGTTCCTTTGACTGTAGAAGAGCTGAAGAATGCCTTTGACAAGCTGTTTGATGATTTAATGGAGGATAAAACCAGAGAAATGGAGCCAGCAGAGGTGGTGTGCACCTCCCTTCTCCCACATCAGAAGCAGGCGCTCTCGTGGATGACCTCCCGTGAAAACAGCAATGATCTGCCCCCCTTCTGGGAGGAGAAGAGTGGCTTCTACTTCAACGTTCTCACTAACTTTGCAGTAAAGGAAAGGCCAGAGAAAGTGCTTGGTGGGATTTTGGCCGATGACATGGGGCTGGGCAAAACCCTCACCACCATTGCCTTGATAGTGTCTAATTTCCACAATGGGAAGCCTCTGCCGCTGGAACAGGGTGAAGGATCATCTTCAACTTCAAGAAAGAAATCAgcctcaaaatACCATGAGGAATCTTATGAGCCAGCGAGTGCATCCCATTCAAAAAGAGCGCATGCTGATGGTGTCAGTGCTGACAGCATTGAGGAAGATGTACCTCCGAAAAAAGCAAAAACCACAAAGAAAACTGCTAAAACATCTGCGAACACCAAGAAAGGAGTGGTTTTGTTGGATGATGTGGACTTTGCTGCTGCTCTGGATTGCAGTTCCTCACGGGTTGGACCTGCAAAAAAGAGTTCAAAGAAGGGTTCTGGCACTAGTAAGGTCCCATCTGGATCCGGTGGGGGCTCAGGGGCCAGAGCCACTTTAATTGTATGTCCTCTGTCTGTCCTTAGCAACTGGCTGGACCAGTTTGAGCAACATATCCGAGCTGATGTCACATTAAAGGTGTACCTGTACTATGGTGCAGAGCGCAGCCGATCTGTCAAACTTCTGTCTGAGCAAGATGTGGTTCTCACAACATACAGTGTGCTTTCATCAGATTTTGGGAACAAAGCCAGCAGTCCTCTGCACAAAGTGAACTGGCTGAGAGTAGTGCTGGACGAGGGTCACGTGATCAGAAACCCTAACGCTCTTCAGAGCAAAGCTATACTGGAGCTACAGTCAGAGCGCAGGTGGATCCTGTCTGGAACCCCCATTCAGAACTCACTGAAGGATCTCTACATGCTGATGTCCTTCTTGAAGCTGAAGCCTTTCGATGTGAAGGAGTGGTGGAACAGAATCATTCAGAGACCCGTGACCATGGGCGACAGAGTTGGACTCAAgAACTTGCAAGCGCTGGTAAAGGGCATCACACTGAGGCGCACTAAGAACAGTAAAGTGGCCGGGCGCGTGCTGGTGCAGTTACCTGAACGGAGAGTGTTTGTGCAGCATGTGACTCTCTCCGAGGAAGAGAGGGAGGAGTACGAACAGGTCAGGAAGGAGGGCAGGAAGATCGTCGGCAGGTATTTTGAAGAGGGAACCATGATGACAAACTATGCTGACGTGCTGGCCATCCTGGTCCGTCTGAGGCAGTACTGCTGTCACCCCAGTCTCTTGGGAAAATACACAGGGGCAGATGATCCTGGGACCCCTAGTGAGCTGCGGGAGCGTCTCATCAATAAGATCACATTGGTGCTGAACTCTGGCTCAGACGAGGAGTGCGCCATCTGTCTAGACTCCTTACGCCAGCCTGTCATCACCTACTGCGCTCATGTGTACTGCAGGCCCTGCATCTGTGAGGTCATCCAATTGGAGAAGGAGCAGGCCAGATGTCCCCTGTGTCGTGCTCAGATCAAGACCAAAGAGCTGGTGGAGTATCCTGGAGAAGAAATGCAGGCCGGAGCAGCCACGGAGGGGAGCTGGAGATCAAGTTCCAAAGTGGATGCTTTGATGAGCAACCTGTTGAAGCTCCGCAATGAAGACCCCACCGTGAAGAGTCTTGTGGTATCTCAGTTTACCAGGTTTATGGATCTTATAGAGGTTCCCTTGAGGGAATCTGGATTCTCTTTCACACGATTGGATGGCTCTATGGCTCAGAAGACCAGAGCAAAGGCCATTCAGGATTTTCAAGACTCCTCTCCAGGAAGTCCCACCATCATGTTACTGTCACTCAAAGCTGGAGGGGTTGGGCTTAATCTGACCGCTGCCTCTCACGTCTACATGATGGATCCAGCCTGGAATCCTGCAGCGGAGGATCAGTGTGTCGACAGATGTCATAGACTGGGCCAGAGCAGAGATGTGGTGATCACTAAGTTTATTGTGAAAGACTCTGTGGAGGAGAACATGGTGAAGATTCAGAAAAAGAAGCAGGAGCTTGTGGACACAGCTTTCGGAGTGAAAAAGCCACAGGACATAAAACAGGCTCGGATTGAAGAGATCAGAGCACTCATGGAGATTTAGTTTAAGATGAAGTTCACATTTCAGATGGTTTTTATTCGAAGGCAGCACtttgttttttccccacttCATTGCAAATTGTTCAGATTTGTTTCATTACGAGAACTATACGGTCTTTGTTGATGGATGATTAAACTGCTTCTGACAACAGCAAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K15711 SMARCA3, HLTF; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16661 lncRNA downstream 4655 11596111 ~ 11600979 (-) True G11231
TU16662 lncRNA downstream 4655 11596111 ~ 11600979 (-) False G11231
TU16806 lncRNA downstream 17549 11587115 ~ 11588085 (-) True G11321
TU16801 lncRNA downstream 29360 11575574 ~ 11576274 (-) True G11316
TU16800 lncRNA downstream 30357 11574382 ~ 11575277 (-) True G11315
XR_006253027.1 lncRNA upstream 35805 11650743 ~ 11653852 (-) True LOC122361822
TU16851 lncRNA upstream 165173 11780111 ~ 11782401 (-) True G11350
TU16874 lncRNA upstream 202082 11817020 ~ 11819799 (-) True G11366
TU16950 lncRNA upstream 328195 11943133 ~ 12033080 (-) False G11425
TU16951 lncRNA upstream 413197 12028135 ~ 12031725 (-) True G11426
XM_043262700.1 mRNA downstream 129463 11475621 ~ 11476171 (-) True LOC122361755
XM_043262689.1 mRNA downstream 138138 11458451 ~ 11467496 (-) True crtc1a
XM_043223724.1 mRNA downstream 152431 11447089 ~ 11453203 (-) True crsp7
XM_043220314.1 mRNA downstream 160524 11440990 ~ 11445110 (-) True cnn2
XM_043222048.1 mRNA downstream 184900 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043225023.1 mRNA upstream 885 11615823 ~ 11624104 (-) True nck1a
XM_043255143.1 mRNA upstream 13207 11628145 ~ 11631800 (-) True slc35g2a
XM_043262837.1 mRNA upstream 64975 11679913 ~ 11685059 (-) True pccb
XM_043253700.1 mRNA upstream 76613 11691551 ~ 11694478 (-) True nceh1a
XM_043219166.1 mRNA upstream 286142 11901080 ~ 11903958 (-) True ghsra
TU16802 other downstream 28118 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 152714 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 156211 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 160521 11442418 ~ 11445113 (-) False cnn2
XR_006253162.1 other downstream 199934 11382106 ~ 11405700 (-) False kcnn1a
TU17467 other upstream 1938914 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1938914 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1938914 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1944284 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1945391 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile