RNA id: TU16661


Basic Information

Item Value
RNA id TU16661
length 4783
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G11231
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11596111 ~ 11600979 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTTTACagcttttcaaaacaaataagtgagTCACTTGCCATCAAAGCTGCCATTCTCTGAACAAGCGGTGAGAAGCTGCCCATAGGTCTCGTTGGACGGACGGAAGACAAACACACCAGAGTTGAAGCAATCAGGCCAACCGGGATCTGGTGCGGCAGAGAGCTCCTCTCGATCAAATAACTCATCTATGTTAGACAAACTAGAGTATCTGCAtccataaacacacatttagagTATTCTGTAAGAGTCCAGCAGTGGAGTTTGGTGAAGGTGACGCCCAGGTCAGGTCTCTTCATCATGGCCAAGTGTGCAGCATCCCTACTGTCCAGCACATCCACCAGCCTGACCTCGTCATAGACCTTGCGAAGCACTGCTCTGCAATGTAGCAGGGCACAATGTGAGACTGACTGATCAATAGATCACACTTCCGCAGGGTGAAAAATACTCTGCGTGACAGAACAAAGCAGTTGAAAACTAAACCGTGCTACAAAACATAGCAAGCTCTACCTGGAGGGTTCAGAGACATGGGGGCCAATCAGGGCCACTAGTTTCCTCGATGTGTTGTGGTTCCTCAACGACTTGCCAAGTACCATTGCTCCTTTGGCATAATTGTCAGTTGTGGCAAGGGTGACAAAAGCCTGGTctgtaacacacaaaaacaccatcTTTTATTGTATGCATTTGAATTCATGTAATATATTGCacatgcaatttaatttttatttttgaattggCGGACACTAGAAGCGTTGCACAACCATTCACATTacttgtagaaatcatactgtaaagtaaatgtgaaaaattaaaaatgacaaacgcTACAACTACACCCGTTTATAGTGCAAACCGTTTAACTGTTAGGTGAACAGTTATTCTTTTCCTTGTTTGATAATTCATCTAACAAATGAATCTAAGAAATGCCTTACAACAGTCCAATTTGCGGTCAGCAGCTTTTGAAAtggcctttttttaaaacataacagtACTGGGATTTCGATAGTATTCCTAAACCACATTACCGAACAGCCAAAACCTAGAGTGGAGCTCTAGCCGAACGATAAGAGAACATTTTGAGCGAAGTAGAGGAACAACGTCCGTTCCACTCAAAGATCCAGAGCGGGTTTCCATCAGTGCGCGCCTGGCGACACCTAAAATGATGCTTCAGCATCTCGAGAAACTTTTTGTTGTtagagaaagaaatgtattccatgcaattatttaatgtaGAAAATAAAACGACACGCCGTGagattttttgggtgaaaaataAACCTAGCATAATACTTAAATACgcataaaaaagggaaaatgtttCGTTGTCGGTGCTCTTATTTGAAACTAAACCTGCAAAAGAACGTGCGCGGCTCTCATActtgtcatttttgagtgatactgattatttttgatgtttgcGTTCATTTAACAATAACCGACGCACTAGCACATGTTTGAGGAACTGATTACAATCCGTCCGAGCTAAAGAAAGCGCGCTTTAAATGCTGTGTTGAGACAGATGGACTAATGCTCTGCGGTGCCGCACTGAAGCGACAGCTCTGCTCTTCCTCCATGTAACCGTCAACACTGCGCACCAAACAACTGCGTATGAGACGCCACTAGGCCCTTCACGCAGCAGCCCAGACGCTTTACTGTGCACGTCGTCAAATATTAAAGGACAACGCGCACAGATAACGCTGAAATAAAATGCCAGCGATGATATCCAGCGAGTTCCGCGACCTCCGAGGCAGCGCGTGCTACAGGCTGCATTCGTGCTACTCGCGCAAAACACAACTGCCTTTTACTTCGTTATTACAGGCACGGGCGATACGTGACGGTTCTTAACGTTGCCTACCTGCCATGGCTCACGTAACAGCCAGACCGAACCGGATACAAGGCCTCGGTGAGAAACGCTGGAGAGAAGCGGTACGTGGTCTGTCAGAGGATTTATACCAGCGACATGACTTTCACGGTCACATGACCCCTGACTACAGACACGCCCCCCTCACTTACCACTACTTCAGTTAAAAACACTGGAAACTCACACTTCCAGGATCTGAGATAAAACAAACGAGCTATGCATATGTTTAATTCAAAGCTTAATTCAGAATTAGAAAATAGAATTTTCTAAATTTTCTCGCGAAATGGTAGTTTCTCTTTTGTCTCATAGCAGTAACAAGTGAATTGCTCTTTCATGCTGATGCCATcttgtgataaaaaaaatcctcgCATTAGTCATTACGCTGGGGGTACTctaatagatttatttattttatgttttcctGTTAACATACATTTTCAGACTCAAGTACATTATATAGAACAGCATGATGCAAAATACAATTTCTCaggaaaaaaccccaaaacaaaacagttttaccGACCATTAGATCCTGCTCGAAGTACGACAACAGCggtataagaaaaataaaatattcatcagGTGATAATTCATATCAAGGCTAAAGAGTATTGACCACGCTCGCACAGGCAGTATGTAAAAATATCTTGTTATTATGCTATATTCTTGTTATGGTTTAGTTTAATCCGGGAGTTTTCAAACTGGGATCCAAACAGGGAGTGCTAGGGGAGGAAAAAAGGTcaagtaaattaatttaaataaataaaactaaagaaCATTACACTATTCACTTTGCTTTCTAAAGTCAGGTCAGAAATCATGAGACTGTGATAGTGAATTAATAAACGAATAAGAAAAGCATGGCtgtcaataatatatattacaaaattacaaaaaaatgcagtttataaaaACTTATTGTTAATGACATTCATATTTGGGGGtatatttgacataaaaatgtttgtaaactCCTGGCCTACCCAGTGGCGCTATGAGACATAGGAACAGTAAAAATACCACTGTAAAAGTTTAGAACGATAgattttgatttcattcatGCATCACACTGGTCgaaaatacagcatttaaatTGCACAAATGCCACTATAACAGCTTAGAtggttaaaatattatataaaatatatttagtattttcagCATGATTTTGTCCTTTGGTGGAAATGTGAGGAAGGTGAAAAACTAACttaacacaatatatatatatataacagtggtatatatataatgttctTGCATCAAAGTTACACATACCAGCATGTCGATAATGCTATATTTACACCTAATacaaaagacaaagacaaaaagatAAGTCGCTATATTTAGTTTCCATTCCAGTATAAAGCAATAACACAACAAGCAAGACTCATCTTCTGAATTGAATCAGCGAGTTCAGAAAGATGATTCATCGGAGATtcattcatttcctgtttttctcATGTGGCTTGAGGTATTGAGGACATTTTATTGACGGAGAGGTGTAACGACTCCTGATACGAGAGAGAGCTCATCTTGGTGCTAAGGGTGGGGTGAGAGGCCACAGAAGTCGAGGTGCACCTCAAGAGCTTGAGCAAGTTCCTGCGGAAGTTCTTCCCAACGAAACCGTACAGAATTGGGTTCATACAGCTGTTGAAAAAGGCAATACAAATGGTAAACGGCATTACGGTGTCAATGATCTCAATGGCATCGCAGTTGGTGATGACTTTCAGCATACCAAGCATGTTCATGAAGTTGAAGATCTGATACGGCGTCCAGCAAAGGAAAAACGACAGCACCGCGGCGGCCAGCATGCTCAACACCTCATCCCCGTTCGACCTCGAGTTCCTCTGTATGTCCCGTGCTTTCAGCAGAGACCGGCCAATCAGGCAGTAGCACGTGAGGATGATGCTGATGGGCAGAAGGAACCCAAGAACGCTCTTCACCAGACTGAGAGCCGCCAGCACGTTGCGAAGATCTTTTTCTTCTAGAATGGCGCATACAGTGACATTGTTATGCTGGATAAAATGGGTCCCACGGATAACGGCTGTGGGAAGGCTTAAAAGGAAAGCCACTACCCAAACCAAGACGCAGGTCACGCGGGCGTACGCCACTGTGCGGCATCGGCGGGACTTGACGGGGTGAACGATGGCCAGATACCGGTCAATGCTGAGAGCAGTGAGGAGAAAAATACTAGTATATAGATTAAGCAGGGCCATACCAGCAATGGCTTTACATAGGAAGTCTCCAAAGAGCCACTCGTAGCCTGTTGCAGTGTATATGGCCCATATGGGCAGGGTGAGGAGGAAAGTCAAGTCTGATACGGCTAAgttcaaaacaaatatgttagCTACTGTCTTCAGCTTCAGGCTGAAGTAGATGACAGCGACTACCAGGCTGTTGCCTACGATTCCGATGATAAAGTTGCAGCTGTAGACTACTGGGATGAAGGTGAAGATGAAATCGTGCTGCCCGGTCATGTTACACGTGAGATTGAGTCCCACGTTAGAGTCGGCTGTGATGTTGTCCATTTTGGAGATCTGTGAAACACGCCTTCAGGTTCACAGCCTAAAAAGCTGCGTCGCTAAAGGAGCCCTATAAGAACAGAGTAGATAAAGATGGTTAATACGGCAAAAAGTTTCATGCAATTTCTCACAAGCTGTGTGAAAGGTGCAttacttacaaaaaaacactagaTGTCTCTCTGCTCATATTATTTAGGagcttgttatttttatttaacagaaagtGGATTGACTAGTACTAGTACAGCTCCTTCCAGTATATTGAAAATTAGCTAAATCTGtgcaattcattaaataaaactatttatgtttaatatcaatcaataaaatacactggtgacattttatattaaggATTATTAACGTAGATATATAAGGTATCACAAGCTAACAATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16806 lncRNA downstream 8026 11587115 ~ 11588085 (-) True G11321
TU16801 lncRNA downstream 19837 11575574 ~ 11576274 (-) True G11316
TU16800 lncRNA downstream 20834 11574382 ~ 11575277 (-) True G11315
TU16799 lncRNA downstream 24800 11569481 ~ 11571311 (-) True G11314
TU16794 lncRNA downstream 35945 11559913 ~ 11560166 (-) True G11309
XR_006253027.1 lncRNA upstream 49764 11650743 ~ 11653852 (-) True LOC122361822
TU16851 lncRNA upstream 179132 11780111 ~ 11782401 (-) True G11350
TU16874 lncRNA upstream 216041 11817020 ~ 11819799 (-) True G11366
TU16950 lncRNA upstream 342154 11943133 ~ 12033080 (-) False G11425
TU16951 lncRNA upstream 427156 12028135 ~ 12031725 (-) True G11426
XM_043262700.1 mRNA downstream 119940 11475621 ~ 11476171 (-) True LOC122361755
XM_043262689.1 mRNA downstream 128615 11458451 ~ 11467496 (-) True crtc1a
XM_043223724.1 mRNA downstream 142908 11447089 ~ 11453203 (-) True crsp7
XM_043220314.1 mRNA downstream 151001 11440990 ~ 11445110 (-) True cnn2
XM_043222048.1 mRNA downstream 175377 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043224954.1 mRNA upstream 4655 11605634 ~ 11614938 (-) True hltf
XM_043224945.1 mRNA upstream 4655 11605634 ~ 11614937 (-) False hltf
XM_043225023.1 mRNA upstream 14844 11615823 ~ 11624104 (-) True nck1a
XM_043255143.1 mRNA upstream 27166 11628145 ~ 11631800 (-) True slc35g2a
XM_043262837.1 mRNA upstream 78934 11679913 ~ 11685059 (-) True pccb
TU16802 other downstream 18595 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 143191 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 146688 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 150998 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 190414 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 1952873 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1952873 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1952873 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1958243 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1959350 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile