RNA id: TU16777


Basic Information

Item Value
RNA id TU16777
length 483
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G11293
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11521991 ~ 11522473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAGAGGAGCAGttacatataaacattaaatgtaaaagccCGGAGATATAAATATATCCAGTCACGCTATCGGGAGAACTGGGAAAACAGCCCAGCTGAATCCCTGAGCTCTGCTTTAGTCTGTGAAGAAGTGAGAAGACGGCTTCAGGCGAGCCAGGCGGTCCGAGCGCCGCTCAGTCTCTCGCTCgggggagaaagagagggacGGCTCACAGCGAAAGAGGAAATCTGGATGTTAATAACTGCCATATGGTGcaacaagaaacatttcacacATTTCACTTATTATCTTCAATGTGGaaatatctattaaaaaaaaaaagaaaaatctattaaaagtagtagaaatgttttctattttcattctttctcgAGGCTGGAGGCGCACTGCAGGGTTTCCCGCTCGCTCCGGATCACGTGTCAGGTTCTCTAACGAACAAACGACACGCGATAAAGCCCTTTACGTGACATTCAACGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16776 lncRNA downstream 8709 11512628 ~ 11513282 (-) True G11292
TU16761 lncRNA downstream 65137 11456326 ~ 11456854 (-) True G11281
TU16760 lncRNA downstream 66588 11454258 ~ 11455403 (-) True G11280
TU16757 lncRNA downstream 73397 11447818 ~ 11448594 (-) False crsp7
XR_006247844.1 lncRNA downstream 81092 11440002 ~ 11440899 (-) True LOC122328878
TU16778 lncRNA upstream 1553 11524026 ~ 11524229 (-) True G11294
TU16779 lncRNA upstream 3394 11525867 ~ 11526352 (-) True G11295
TU16780 lncRNA upstream 4778 11527251 ~ 11527621 (-) True G11296
TU16781 lncRNA upstream 5470 11527943 ~ 11528343 (-) True G11297
TU16788 lncRNA upstream 19234 11541707 ~ 11541957 (-) True G11303
XM_043262700.1 mRNA downstream 45820 11475621 ~ 11476171 (-) True LOC122361755
XM_043262689.1 mRNA downstream 54495 11458451 ~ 11467496 (-) True crtc1a
XM_043223724.1 mRNA downstream 68788 11447089 ~ 11453203 (-) True crsp7
XM_043220314.1 mRNA downstream 76881 11440990 ~ 11445110 (-) True cnn2
XM_043222048.1 mRNA downstream 101257 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043224954.1 mRNA upstream 83161 11605634 ~ 11614938 (-) True hltf
XM_043224945.1 mRNA upstream 83161 11605634 ~ 11614937 (-) False hltf
XM_043225023.1 mRNA upstream 93350 11615823 ~ 11624104 (-) True nck1a
XM_043255143.1 mRNA upstream 105672 11628145 ~ 11631800 (-) True slc35g2a
XM_043262837.1 mRNA upstream 157440 11679913 ~ 11685059 (-) True pccb
TU16758 other downstream 69071 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 72568 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 76878 11442418 ~ 11445113 (-) False cnn2
XR_006253162.1 other downstream 116291 11382106 ~ 11405700 (-) False kcnn1a
TU16802 other upstream 53918 11576391 ~ 11577516 (-) True G11317
TU17467 other upstream 2031379 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 2031379 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 2031379 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 2036749 13559222 ~ 13560265 (-) False LOC122328470

Expression Profile