RNA id: TU16799


Basic Information

Item Value
RNA id TU16799
length 1831
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G11314
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11569481 ~ 11571311 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAATCTCCCAATAATAAAAAGAGGCACATAAAATTACTTAAGGATCAGCGAAAAGCATGACTAAGAGTTTAAGTGTGGAGACTTAAGGATGTGGTTGACTTCAGGTTACAGCACACCATCATTCAAAAGAGCAAAGCGGGCGGTAATACGCTTTTGATTAACATGCAGTTTGgatggaaataaagaaatacagctCAGCATAAGGAAGGTACCTCAGATTCTCCAATGGGATATTAGATATCCTACATTAAAAGCTTATGGAAACACGTAATAAGAACACAGACGGGCTCGGATAGGGTGTGTCATGCACGTGTATTTTAGGAGCAACGGGAGAGTAGCCGAACTCGGGAACACGCTGGGAATTGCGTCTTTATTCATATATTCCAAAGGCTCTCTGGTGGCGTGTAAACAGGGGAAGCTCTGAGGTTAGACTGGTCTAGAAGAGAAAACGGGCCTGGATTCTGTAATGGAGGACAGTATTTTTCTATATCTTCTCACCGATTTAGCCAGTTGACTTCCCAGTGCTTCAAACTCTCTTCCCTTTAAAAAGACAAGCAAGAGTTGGTGACCTGTGATTAAGTCAACCCAACAAACAGCAGTTGTAGGTGGTTGAGTTCACCCTGTTGATGTTGTTTATTGGGTTGGTGCAAACCAGCCTTAAGGTGTTTCAATTTGAGCGACTAGCTTTGACGCAGGCTGGAAAAataaactgcacacacacacagaaaaaaaaacaaaaaaaaaacaagaatgtgGTGCCCTTTTTTCCGACTTGAAATCCCGGCAAACCAGAGCTGACATGCAAGCGTGCTCAGATGGAAAGAACAGCTGGAAGTGGTAATAATAAGGAGTTTTTAACCAGCGCTTTGGATTTTCCAAAATGACTGAGCAATATGATTTGATGtaatacactattaaaaaaGCGTGTCTTGGGAGAACAGTGTTTCAGACATAATCAACCAGCTGGAGTATGTGACATCTGTTATGAGGCAAACGCTTACAGTCCTAATTAACAGAACTCTTCCAGCCACAAAAAACACTGTACCTCAAGAACACACTTGTAAAGCTTGTAACACGTGAAGCTTCCACTGACTCAAACAACATGCACATGACATCTAGTTTTTTGCTCCTGGTGACCATTCGAAAATTTGGcaagatgttttttattttttgcctcttaatgctcaacaaggctgcatttatttgataaaaatactgagtaaaaatgtatataatgagaaatataattaataaataataaaataacagttttctgtcttaataatttttaaaatgtaatttattcctgtaatggcaaagctgaattttcagtatcattactccagtcttcagtgtcacatgattcttcataaatcatataaatgcgCTGCtttagtgctcaagaaacatttctttttctgagCTAAATTAGAGGATAAATGAGACGAGCGATACTCACAGCTCACTGGCCGTAGATGAGTTTCTGGACATGGCCTTGGGTGAAAGGTCAAAGTCAGAATCGGAGCGATACAGGAAGGACTCCCGCCGCTGACTGTGAGGGAAATTGGCCTGCAGCACAAGGCCGGAGCCTGGACTGGCCTGGGACTCCAGAGGACTGCGACCCACTGACAGCCCATTTTCAACATCAAAACtgaggaaagaaaaacagaaagaaagggTTAACACAATTCACCTAGGAGTGGCTTTATTTATTAGGATGATTTTGTACGCCCCTGCGAGATAAACGGTCAGCAAACACTCTACGTCTATGACCTGACCTAAACTAGTAAAGAAGGTCACTGAGACCTTGATAAAAATGGTTACACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16794 lncRNA downstream 9315 11559913 ~ 11560166 (-) True G11309
TU16793 lncRNA downstream 9830 11558804 ~ 11559651 (-) True G11308
TU16790 lncRNA downstream 17997 11550832 ~ 11551484 (-) True G11305
TU16789 lncRNA downstream 23213 11545758 ~ 11546268 (-) True G11304
TU16788 lncRNA downstream 27524 11541707 ~ 11541957 (-) True G11303
TU16800 lncRNA upstream 3071 11574382 ~ 11575277 (-) True G11315
TU16801 lncRNA upstream 4263 11575574 ~ 11576274 (-) True G11316
TU16806 lncRNA upstream 15804 11587115 ~ 11588085 (-) True G11321
TU16659 lncRNA upstream 21130 11592441 ~ 11606602 (-) False hltf
TU16661 lncRNA upstream 24800 11596111 ~ 11600979 (-) True G11231
XM_043262700.1 mRNA downstream 93310 11475621 ~ 11476171 (-) True LOC122361755
XM_043262689.1 mRNA downstream 101985 11458451 ~ 11467496 (-) True crtc1a
XM_043223724.1 mRNA downstream 116278 11447089 ~ 11453203 (-) True crsp7
XM_043220314.1 mRNA downstream 124371 11440990 ~ 11445110 (-) True cnn2
XM_043222048.1 mRNA downstream 148747 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043224954.1 mRNA upstream 34323 11605634 ~ 11614938 (-) True hltf
XM_043224945.1 mRNA upstream 34323 11605634 ~ 11614937 (-) False hltf
XM_043225023.1 mRNA upstream 44512 11615823 ~ 11624104 (-) True nck1a
XM_043255143.1 mRNA upstream 56834 11628145 ~ 11631800 (-) True slc35g2a
XM_043262837.1 mRNA upstream 108602 11679913 ~ 11685059 (-) True pccb
TU16758 other downstream 116561 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 120058 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 124368 11442418 ~ 11445113 (-) False cnn2
XR_006253162.1 other downstream 163781 11382106 ~ 11405700 (-) False kcnn1a
TU16802 other upstream 5080 11576391 ~ 11577516 (-) True G11317
TU17467 other upstream 1982541 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1982541 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1982541 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1987911 13559222 ~ 13560265 (-) False LOC122328470

Expression Profile