RNA id: TU16800



Basic Information


Item Value
RNA id TU16800
length 896
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G11315
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11574382 ~ 11575277 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCTGAGACCTGGTTTCCTGACTTGCTTGTCTCTGACAGCTGGGTTAGTTCTCGATTCAGCATCCTTTTGAACTGCAGAACAGCACGCAACAAAACACATATTCGCTTTGTGAATCAACATCTACAATCCaccgtttttattttaattagaggCTTTACATAAAACACCTCCCCgaatcttttaaaattaaaatacaaaaattattctACAAATGTGTGCTGCAAAACATCGCATGACACGTCCATATCTGAATATAACTGCATTACAGAGTGGCCTTCATTCAGCTGCCACAGTCACCCAAGACGAGGGGCTGGACCAAGCAAGGAGGAGTGTCTTTCATCTGTGTAGTGCTATTATGTAATCATACACGAGGTTTCAGAATGAAACACTTCCGAGTGAGGCAGCAAAATGTACAGTAGTACTGtggaaaccacacacacacagagacatcaGAAACACCCAACACACCCAAACCGACATCCTCAGCAACACGCTGCACCATCTGTGATTTATAGAGTGTCAGCAATAGCATCCCTCTCAACTCCAGATGAAAACAATGCAAGAGCTTCTCCCAAGAGCAGAATCACAACGCAAGCCTTACCTGAACATGCATCCACGACACAGAGAGCAAGTAACTGACGTCTGGCATCTCAGCACCAAATGAAGCTTTAACAAAACAGAAGCTCCGTCCGGCCGGTGCACATGCTACAGACACGTTCCAGATGTTCAACAGCAGTCTAGCGGTCCGAAACGAATGTGGCGGCACTGCAGAGCTCAGCCCAGCACCGGGAGCTCCAGCTGCCATGGGCTGCACCTGTGGCAGGCTGAGAGCTTGTGCCGCTGGCTGGAGCGAGTCTGCATCGCTGCCGCATGCTCCGCTCTCCTACTCTGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16799 lncRNA downstream 3071 11569481 ~ 11571311 (-) True G11314
TU16794 lncRNA downstream 14216 11559913 ~ 11560166 (-) True G11309
TU16793 lncRNA downstream 14731 11558804 ~ 11559651 (-) True G11308
TU16790 lncRNA downstream 22898 11550832 ~ 11551484 (-) True G11305
TU16789 lncRNA downstream 28114 11545758 ~ 11546268 (-) True G11304
TU16801 lncRNA upstream 297 11575574 ~ 11576274 (-) True G11316
TU16806 lncRNA upstream 11838 11587115 ~ 11588085 (-) True G11321
TU16659 lncRNA upstream 17164 11592441 ~ 11606602 (-) False hltf
TU16661 lncRNA upstream 20834 11596111 ~ 11600979 (-) True G11231
TU16662 lncRNA upstream 20834 11596111 ~ 11600979 (-) False G11231
XM_043262700.1 mRNA downstream 98211 11475621 ~ 11476171 (-) True LOC122361755
XM_043262689.1 mRNA downstream 106886 11458451 ~ 11467496 (-) True crtc1a
XM_043223724.1 mRNA downstream 121179 11447089 ~ 11453203 (-) True crsp7
XM_043220314.1 mRNA downstream 129272 11440990 ~ 11445110 (-) True cnn2
XM_043222048.1 mRNA downstream 153648 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043224954.1 mRNA upstream 30357 11605634 ~ 11614938 (-) True hltf
XM_043224945.1 mRNA upstream 30357 11605634 ~ 11614937 (-) False hltf
XM_043225023.1 mRNA upstream 40546 11615823 ~ 11624104 (-) True nck1a
XM_043255143.1 mRNA upstream 52868 11628145 ~ 11631800 (-) True slc35g2a
XM_043262837.1 mRNA upstream 104636 11679913 ~ 11685059 (-) True pccb
TU16758 other downstream 121462 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 124959 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 129269 11442418 ~ 11445113 (-) False cnn2
XR_006253162.1 other downstream 168682 11382106 ~ 11405700 (-) False kcnn1a
TU16802 other upstream 1114 11576391 ~ 11577516 (-) True G11317
TU17467 other upstream 1978575 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1978575 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1978575 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1983945 13559222 ~ 13560265 (-) False LOC122328470

Expression Profile