RNA id: TU16949


Basic Information

Item Value
RNA id TU16949
length 1174
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G11425
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11943133 ~ 12033080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCATGAAGTACAGCTTTAATGtaagaatgaaaaaaacccacacacaacaaaaagagTTTCAGCACAGTTTTAAAGGCCTTCCTATGTACTGTATCCACCAGCACTCGAGCTGCAATAAAGTAACTCTTGTTTCCTAACAGTCTTGTATCCAGCAAAGCAAATCATTGCTATAGAAGTTTGTCATCGGAAAGATATACTTCAAAATATGGACATTTTTATAATggcaaaaaacacaaatgtaatacCACTAATGTaactcaaaatgtaataatatatatatatatgcattaacaAATTGTAGGTGATGTTATTTCGtggtttgattttaaaatagtttagaTAATCTTCTTTCAGGTCACTCTCTGAGTTGCACGACACCACCGAATTTCTCAGTATTAAACGAAAAGGACAAAATCACactaataaaacacacttaaaactattattttataatgcctTTAAAATATCTCGAACAGACATAATAttggtaatataataataatgtacaatCATTTAAATCTCAACATCAGTTGCAACAAAGCCAGTGCATGTCTGTATTGTGCACCAACTTTCAGGATTATGCTTTTTGTGTTTAGTTAATCTCTTTACCTGCTCCTAGACCAATTACTTTGAATGTTGAGCTAAGCCGTTGAGCTCTCGGTGTGAAGCTCTGTGGAACATTACAGATCAGTTCTGTCATTACAGGTGAGTTTTGTGACAGCAGTAACATTGTTCATTCCACAGTTTTCAGAAGATACAGCCTCTTTCAGGCGTCTGTAGAGCTCTTGAGCTGCTCCATCTCAGCTTCCTCTTGAGGTTTGGGAGGGGGAGCTCCACGTTTGCGATGGAAAACAGCTGTTATCTCCTCAAAAGTCTTCCCTTTTGTTTCAGGTACACGGAAGTAGATAAAAACAGTGAAGCCGAATAGGAGAACTGCAAAAACGATGAAGACATAGCTCCCACAAAGACCTCTAAATAAGGGAAAAACATGCCAATGATGAAATTACATGTCCAGTTGCAACACCCAGCTAATGCGATGGCTGCTGGACGCGGCCCCTGACTGAAGATCTCTGCCACAATGAACCATGGGATTGGTCCGGGCCCGATCTCAAAAAACGACACGAATAGGAATATGGCTGCCATGCTGAGGTAGCTCATCCACGAGTAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16951 lncRNA downstream 103 12028135 ~ 12031725 (-) True G11426
TU16874 lncRNA downstream 212029 11817020 ~ 11819799 (-) True G11366
TU16851 lncRNA downstream 249427 11780111 ~ 11782401 (-) True G11350
XR_006253027.1 lncRNA downstream 377976 11650743 ~ 11653852 (-) True LOC122361822
TU16661 lncRNA downstream 430849 11596111 ~ 11600979 (-) True G11231
TU16955 lncRNA upstream 1929 12035009 ~ 12036429 (-) True G11429
TU17110 lncRNA upstream 238663 12271743 ~ 12272390 (-) True G11549
TU17112 lncRNA upstream 246678 12279758 ~ 12281210 (-) True G11551
TU17114 lncRNA upstream 246678 12279758 ~ 12281210 (-) False G11551
TU17119 lncRNA upstream 246678 12279758 ~ 12281210 (-) False G11551
XM_043219166.1 mRNA downstream 127870 11901080 ~ 11903958 (-) True ghsra
XM_043253700.1 mRNA downstream 337350 11691551 ~ 11694478 (-) True nceh1a
XM_043262837.1 mRNA downstream 346769 11679913 ~ 11685059 (-) True pccb
XM_043255143.1 mRNA downstream 400028 11628145 ~ 11631800 (-) True slc35g2a
XM_043225023.1 mRNA downstream 407724 11615823 ~ 11624104 (-) True nck1a
XM_043218296.1 mRNA upstream 59285 12092365 ~ 12094581 (-) True cldn11a
XM_043253555.1 mRNA upstream 228836 12261916 ~ 12266122 (-) True rabggtb
XM_043262127.1 mRNA upstream 234005 12267085 ~ 12270472 (-) True acadm
XM_043219208.1 mRNA upstream 249002 12282082 ~ 12286011 (-) True best4
XM_043224103.1 mRNA upstream 254345 12287425 ~ 12292955 (-) True si:ch211-106k21.5
TU16802 other downstream 454312 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 578908 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 582405 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 586715 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 626131 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 1520772 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1520772 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1520772 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1526142 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1527249 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile