RNA id: TU16955


Basic Information

Item Value
RNA id TU16955
length 420
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G11429
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12035009 ~ 12036429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGATACCTTGGCATGTCCATGCTTGCCAGTCTTGGAGGTAGACATCTCCACAATCTTGCAGGGACGGCCCTTAAGCACCACAAAGCCGTTCTTACGCAGAGCACTGCACTGCATGGGGAAGGTCAGGGAAGCCCCAGCATCTCCACTGGTGAAGTCAGTATCAAGATCAGCCATGATGGGTGAAGTGGAAAGGATTCCCAGACGACGTGATCACACAATCGACCGCTTCAGGACACCGTCTTCAAACGACAAATCCTCTTTCCCGAGCTGCGTCCACCCACTGTACTGTATACAGAGGATTCGTCTAGAAATGTTGCGATGCTGGAGCAGAGAACATTGAAAACGCCAGTCATTCCCTTCCAACAAAAGACGGAGAGATCTGCGCATGCGCGTGCACCTTTACTGCAACGAGATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16950 lncRNA downstream 1929 11943133 ~ 12033080 (-) False G11425
TU16949 lncRNA downstream 1929 12031828 ~ 12033080 (-) True G11425
TU16951 lncRNA downstream 3284 12028135 ~ 12031725 (-) True G11426
TU16874 lncRNA downstream 215210 11817020 ~ 11819799 (-) True G11366
TU16851 lncRNA downstream 252608 11780111 ~ 11782401 (-) True G11350
TU17110 lncRNA upstream 235314 12271743 ~ 12272390 (-) True G11549
TU17112 lncRNA upstream 243329 12279758 ~ 12281210 (-) True G11551
TU17114 lncRNA upstream 243329 12279758 ~ 12281210 (-) False G11551
TU17119 lncRNA upstream 243329 12279758 ~ 12281210 (-) False G11551
TU17140 lncRNA upstream 302847 12339276 ~ 12359064 (-) True G11565
XM_043219166.1 mRNA downstream 131051 11901080 ~ 11903958 (-) True ghsra
XM_043253700.1 mRNA downstream 340531 11691551 ~ 11694478 (-) True nceh1a
XM_043262837.1 mRNA downstream 349950 11679913 ~ 11685059 (-) True pccb
XM_043255143.1 mRNA downstream 403209 11628145 ~ 11631800 (-) True slc35g2a
XM_043225023.1 mRNA downstream 410905 11615823 ~ 11624104 (-) True nck1a
XM_043218296.1 mRNA upstream 55936 12092365 ~ 12094581 (-) True cldn11a
XM_043253555.1 mRNA upstream 225487 12261916 ~ 12266122 (-) True rabggtb
XM_043262127.1 mRNA upstream 230656 12267085 ~ 12270472 (-) True acadm
XM_043219208.1 mRNA upstream 245653 12282082 ~ 12286011 (-) True best4
XM_043224103.1 mRNA upstream 250996 12287425 ~ 12292955 (-) True si:ch211-106k21.5
TU16802 other downstream 457493 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 582089 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 585586 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 589896 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 629312 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 1517423 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1517423 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1517423 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1522793 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1523900 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU274192 True 254 lncRNA 0.40 1 CI01000055 5692676 ~ 5692929 (-)
eurasian perch (Perca fluviatilis) TU274192 True 723 lncRNA 0.40 2 NC_053131.1 13398815 ~ 13400682 (+)