RNA id: TU17112


Basic Information

Item Value
RNA id TU17112
length 1078
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G11551
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12279758 ~ 12281210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGAGTTGGGGTATTTTCTTTAATGGTCGTATCAAAGAGAGCTGTACATTTATTTGCCTTTCTTGGCTTTAATCTTCCTCAGGTAAAACTCCAGTTCTTTGCCCTCAAGGACGTAGCCATCAGCCCTGCCACACTGTCCTGGTCTGGAGGCAATGCAGCAAGAAGTTTCCCCTGCAGAAACTGCTCCTCCAGCAGAGGACTGATTTTGCTGTTCTTTCTGCGCTTATCAAACTTCTTTTGGACCTTCTTTGACCTCTTCTTGTTCAGGATTTCCTCTTCTTCAGGGGTCTGCTTGGCACCCTTCTTCCTGCCAAGTGGAAGAGCGTAGTGAGACTCGTACCACTGTCTGTAGGGATTGCTGTCCACAAGGACAACGCAGTTCTTCACCAGGGTCTTGGTTCTCACCAGCTCATTGTTAGAGGCATTGTAGACCACATCAATGATCCTAGTCTTGCGGGTACAGCCTAAAATATAAACAGCTCTAATGAAGCACCCAATAAGAGCTcagcaaatgaaaattaagaCCAGATTGTGTCTTTCTCAGTGATGAAATGGTATCTTTCAAGCACATTCAGTAGCAGAACTGGACAAGTTATCTTCATTGAAAGAGCTACACCTATAAGAAGAGCAAAATGTTCGAGAAGCTTACATTCTGAGCCCCAAGAGAAATTTCCCACATCGAGCCTCAAAGCACGGTATTTCTTGTTTCCACCACGGACTCTTATTGTGTGGATGCGGCGAGGTCCAATCTAAGGAGAGCCATAAAAATTAGTTTATAACGTGATAAAAAGATCAAAATAGCGGCATTTTGAGCCCGGCTGTGTGTCAGTGTAACTATGACTAATCCTAACATTGGAAGGTCAAGGTTTTGACCAAAACGGCCAAAGAGACCAACCTAAGGAAATGTTTTCATCACCCACATTGTTGCAGAGATacttttagcaaaaataaatgtaaagttagATTAACCTTTGTGTTCGCGGGAGGACGCCCAAGCTCATATTTCCTTTTCTTGTGGACGGGCTTGCGCTTGCCACCAGTCTTGCGGCGTTTGTGCCAGTTGTCCCTTGAGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17110 lncRNA downstream 7368 12271743 ~ 12272390 (-) True G11549
TU16955 lncRNA downstream 243329 12035009 ~ 12036429 (-) True G11429
TU16950 lncRNA downstream 246678 11943133 ~ 12033080 (-) False G11425
TU16949 lncRNA downstream 246678 12031828 ~ 12033080 (-) True G11425
TU16951 lncRNA downstream 248033 12028135 ~ 12031725 (-) True G11426
TU17140 lncRNA upstream 58066 12339276 ~ 12359064 (-) True G11565
TU17156 lncRNA upstream 71269 12352479 ~ 12353826 (-) True G11572
TU17133 lncRNA upstream 80441 12361651 ~ 12366865 (-) True G11561
TU17131 lncRNA upstream 91362 12372572 ~ 12374335 (-) True G11559
TU17149 lncRNA upstream 93441 12374651 ~ 12439008 (-) True G11568
XM_043262127.1 mRNA downstream 9286 12267085 ~ 12270472 (-) True acadm
XM_043253555.1 mRNA downstream 13636 12261916 ~ 12266122 (-) True rabggtb
XM_043218296.1 mRNA downstream 185177 12092365 ~ 12094581 (-) True cldn11a
XM_043219166.1 mRNA downstream 375800 11901080 ~ 11903958 (-) True ghsra
XM_043253700.1 mRNA downstream 585280 11691551 ~ 11694478 (-) True nceh1a
XM_043219208.1 mRNA upstream 872 12282082 ~ 12286011 (-) True best4
XM_043224103.1 mRNA upstream 6215 12287425 ~ 12292955 (-) True si:ch211-106k21.5
XM_043224084.1 mRNA upstream 12138 12293348 ~ 12319104 (-) False LOC122328397
XM_043224091.1 mRNA upstream 12138 12293348 ~ 12319104 (-) False LOC122328397
XM_043224076.1 mRNA upstream 12138 12293348 ~ 12319104 (-) True LOC122328397
TU16802 other downstream 702242 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 826838 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 830335 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 834645 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 874061 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 1272642 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1272642 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1272642 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1278012 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1279119 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile