RNA id: TU17183


Basic Information

Item Value
RNA id TU17183
length 2026
RNA type TUCP
GC content 0.21
exon number 2
gene id LOC122358236
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12623823 ~ 12626387 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACATGACAGAAGAGAGCTGGAACACCTCACTGTCTCTCTATTCTCATCTTTTGAAGCAGAATGGTAATCTGGAAGATGTTACTGCACAACATCTCCTTCAGACGCCACATTCTAGACCTCGTCTTTTAACCTTGCTCCATGGATGTGCTAACCATTCACATTATGGAGGACTCATCTGACAGTGCAGTGTTTCGGGTCCAGGTTCAGTGTGCTGATCCTCTCCTGCTAAACTTCTGGCTACAGAAGACCTTCTTCAACAATGGGGAAGTCCAGCAGATCAACACCCTAAGAATAAACGACTGTCGTGGGCTAGTGTTTGTTTTGAGGGTGCTGCATCGTTCTTCACGCCTCCCTAATTCCCATTATTGGTGCCCTTTCCTAGTGACACTCTGCCTCGATGCCCTGGCATTTCACTACCACCTCCCCTCTGTGCCACAGTGGAACGGCACCCTTCGAGAGGCAATGAGAGGAAACAGCCTGGAGCTCAGACGCTGAGAGACTATGAGATTTTTATGAGCTTACAGATCCTATTAGTCTCTATTAGTCATCCTAAAGTGATACACTGCAAGTAGTACGTCTTACCATTGTAAAGGTAGTACGTCCCGTCTTTGAACACAGCAATGGCAGGAACATCCTGCAGAGTGACCGCCTTTggagaatattaaaaattaatctatTCGTTTTCTAAGAAGCTAATTATTCCACAGAGGTttgaaaaaggaaaattctgtcatgaatcaccttcatgttgttccaaacgaGATctgtctgaccctccatagacagcaacacaactaaaatgttcccaggtccagaaatgtattaaaaacattggtaaaacatgttcatgttacatcagtggctcaacttcagttttgcaactctacaataatagttttttttttgtcaaatacatTCTTAAGCAATCTCAAAAATGTCAGAAGACATAACTCAGGGGAGAAGAAaagttctttttgttttctttgtgcaatgAAAAGTATTCTAGTAGCATCGCAAAACCGCTAATGTCACATAGACAGatgttttacagatttttactacttttctggacctgggacatttcagttgtgttgctgtctatgggtcagatagctctctgatttcatcaaaaaatatcttcattgcTGTTCTGAAgttgaatgaaggtcttacgaGTTTgtaacgacatgagggtgagtaattaatgacagaatttgaattttgggataaactaaccctttaagtggAAGTCTTACCTTTGGAAGGACTTCTTCAGATGCAGTGAAAAAATATGTGTGGATGATATGCTCTGTAGCAGCTTTGTAGTATTTCTTCTGtttagaaaaagcaaaaaactgtACATTGTGTTTCAATGGTAGTATACTATTTTAACCATTTCTGCATGACctagcaaaaacaaatattcttatagtttatttataagacagtaaaactttaaatgaaaatactaaCCAGAAGCAGCGGTAGCTGTGAACACTAGTCAAGTGTTCAATAGTTTGCATTTCATTACTATTCcatcattattcattcattgtcCATAAATATGACCgttattaattttacataatgtttACCTTAAGGTGCGACTCTCCTCCAATGTAAACGAAGATAAGATCGTGACGACTCATAACATGCTGGAACAACTGAACACTAGAAAGTGGCCTTACCACAGGTCTAGGTTAAAGAAAAAAGGACAAGGGGATACCATGAGTAGAATTATAAGTAGCAtcgacataaaaataaaatctatgcGGAACACGAAAGACACAAGACAATTCATTATGATGAAAATTACCCTGAAACTCTGTTGGTGAATTCAATAATAGCATCCTTTGTTCTAGGCCCTTTGTAGTCAAAAGACAGCTCtcctttaaaacttaaaaaaaaaaaatacagaaagtcaaattattaaatgaagttataaaaatgttattatatatatatatggtaaattGTCATTAACTCACAGTTTTATGGTTGGATATCCACGAATATTAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17180 lncRNA upstream 2409 12615995 ~ 12621414 (+) True G11595
TU17178 lncRNA upstream 9227 12614375 ~ 12614596 (+) True G11593
TU17175 lncRNA upstream 78231 12545353 ~ 12545592 (+) True G11590
TU17037 lncRNA upstream 284774 12337667 ~ 12339049 (+) True G11505
TU16942 lncRNA upstream 522697 12100875 ~ 12101126 (+) True G11419
TU17208 lncRNA downstream 70699 12697086 ~ 12697294 (+) True G11618
TU17212 lncRNA downstream 119425 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA downstream 119425 12745812 ~ 12759891 (+) False G11622
XR_006253165.1 lncRNA downstream 182685 12809072 ~ 12813327 (+) True LOC122362827
TU17386 lncRNA downstream 688842 13315229 ~ 13466961 (+) False G11740
XM_043223600.1 mRNA upstream 82250 12488213 ~ 12541573 (+) True cdh7a
XM_043217968.1 mRNA upstream 243213 12376957 ~ 12380610 (+) True impa1
XM_043260495.1 mRNA upstream 247087 12361720 ~ 12376736 (+) False asph
XM_043260486.1 mRNA upstream 247087 12364627 ~ 12376736 (+) True asph
XM_043260504.1 mRNA upstream 247087 12364627 ~ 12376736 (+) False asph
XM_043257989.1 mRNA downstream 3644 12630031 ~ 12650410 (+) True tesk2
XM_043258015.1 mRNA downstream 27491 12653878 ~ 12656884 (+) True si:ch73-382f3.1
XM_043218997.1 mRNA downstream 31659 12658046 ~ 12660442 (+) True selenop2
XM_043219017.1 mRNA downstream 34528 12660915 ~ 12664376 (+) True elovl8a
XM_043219008.1 mRNA downstream 34528 12660915 ~ 12664376 (+) False elovl8a
XR_006247863.1 other upstream 342319 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 343164 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 343809 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 686233 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 1118093 11502402 ~ 11505730 (+) False mast3a
TU17265 other downstream 241596 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 241596 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1548977 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1548977 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 2149935 14776322 ~ 14782977 (+) False ackr4a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030980 True 905 processed_transcript 0.43 3 NC_007113.7 27321014 ~ 27324181 (+)
grasscarp (Ctenopharyngodon idella) CI01000332_00112113_00119568.mRNA True 1571 mRNA 0.35 5 CI01000332 111613 ~ 120138 (-)