RNA id: TU17212


Basic Information

Item Value
RNA id TU17212
length 926
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G11622
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12745812 ~ 12759891 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTCTTAAAAGGATCACTCTTTATTTCGCGTCGTATAAAACATCCATTGATATGTACACACATTCTCGGAGGTTCATTAGCGTCAGTCACAATTCCAGTGAAGACAGTCTCAGCCCAGATGTTACTATGGTACTGCGTTAAAAACAAACCCATACAGCGCTTGGGATTTAATCAGATTTGATCCTTCTTCACTTATTCCACATTCTTCAGTGATCGTACAGTGCATCGGAACTAATGAAAGCACATCAATCCAACTGAGAAAGACATGTTTCgaatgaaaattatattaaagattAGATGGATTGGTGTGGAGCCATTATAAAAAGTAGGTAAAATAGAAAAGACGGCCTACATAATCACTGAAATGAGTCAGGACCAGCCTTTTGGGTGAATCTCTCAAAAGCCTGTCAGGAAATATCTGGGTCACATTTCACCACAAAATCATTAGGagaatttttctttattttgcatgtaaGATTTTTGCCATATTTTACCCTCAAATTCTCATTCACGTTTTACCACTAAATGATTATTATAgcaatacagtattttttaataaataaacagcataagTCAAGGTGAactatacttatatatatatatatattataattatatattttatatatacacacacacacacacacacacacacacacacacacacacacacactaaggtGACCATGCATGCCATTTTTCCCGGATGCGTCCTTGTCATTGGTTTGaacgcaaacaaagccaaaacctagatattttaaGCAGtacagaaatcctggccaggacatGGCTCTTATggtcagacagacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattata

Function

GO:

id name namespace
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17208 lncRNA upstream 48518 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 120860 12623829 ~ 12624952 (+) False LOC122358236
TU17180 lncRNA upstream 124398 12615995 ~ 12621414 (+) True G11595
TU17178 lncRNA upstream 131216 12614375 ~ 12614596 (+) True G11593
TU17175 lncRNA upstream 200220 12545353 ~ 12545592 (+) True G11590
XR_006253165.1 lncRNA downstream 49181 12809072 ~ 12813327 (+) True LOC122362827
TU17386 lncRNA downstream 555338 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA downstream 555338 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA downstream 555338 13315229 ~ 13466961 (+) True G11740
XR_006253121.1 lncRNA downstream 608702 13368593 ~ 13410609 (+) True LOC122362453
XM_043263907.1 mRNA upstream 5974 12699932 ~ 12739838 (+) True zswim5
XM_043219017.1 mRNA upstream 81436 12660915 ~ 12664376 (+) True elovl8a
XM_043219008.1 mRNA upstream 81436 12660915 ~ 12664376 (+) False elovl8a
XM_043218997.1 mRNA upstream 85370 12658046 ~ 12660442 (+) True selenop2
XM_043258015.1 mRNA upstream 88928 12653878 ~ 12656884 (+) True si:ch73-382f3.1
XM_043264411.1 mRNA downstream 25237 12785128 ~ 12790107 (+) False tmem68
XM_043264420.1 mRNA downstream 25259 12785150 ~ 12790107 (+) True tmem68
XM_043264429.1 mRNA downstream 25267 12785158 ~ 12790107 (+) False tmem68
XM_043261339.1 mRNA downstream 103974 12863865 ~ 12867056 (+) True buc
XM_043253375.1 mRNA downstream 108038 12867929 ~ 12874008 (+) True rnf152
TU17183 other upstream 119425 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 464308 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 465153 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 465798 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 808222 11908073 ~ 11937590 (+) False pld1a
TU17265 other downstream 108092 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 108092 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1415473 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1415473 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 2016431 14776322 ~ 14782977 (+) False ackr4a

Expression Profile