RNA id: TU17266



Basic Information


Item Value
RNA id TU17266
length 620
RNA type TUCP
GC content 0.50
exon number 3
gene id rnf152
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12867929 ~ 12874008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGCAGAGTGAAGTATGACAGATGAGTCTTGCTCTGCACGCGATGTTCACCGTTTGCATAGATGAAAACACCTCACGACGTACAAGaGCCATTTCATCATTAGATGGGGAAAGATATTCCTGTGAACTGCTTTTATTTCCAACTGCGCTCATCGAATGATTCAAAGCCCTGCTTGGATCTATACTAAACCCATGGCCGAGCCAGACGTGGATTAAAACGCTGAAGGCCCCAATCGGCGCGGAGCGGTTGACGGAGAAGTGCATTGGTGATACAAATCGACAAGAATACTGTCATTAAAGCAAGCGAAGAGCGTTTTAAAGATGATGGACACCTTGTCCCAGAACTCCAGGCTTGAGTGCCAGATATGTTTCAACTACTTCAGCCAATGGCGCCGTCCTAAACTCCTGCACTGCCAGCATACCTGCTGCTCCGTGTGTCTGAGCCAGATGAGGCTCAGCCAGAGAGAGCTCCGCTGTCCTTGGTGTCGTTGCGTGACGCAGATCCCCAACGGACTTTCCGTTTCCCATCTTCCAGACGACCCGGAAGTACTTTCCATTATCAGTCTGTCACACTCCTCCGAACACACTCCCATCTTTATACACTTGCCCAACAGCAGCTGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006253165.1 lncRNA upstream 54656 12809072 ~ 12813327 (+) True LOC122362827
TU17212 lncRNA upstream 108092 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA upstream 108092 12745812 ~ 12759891 (+) False G11622
TU17208 lncRNA upstream 170689 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 243031 12623829 ~ 12624952 (+) False LOC122358236
TU17386 lncRNA downstream 442144 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA downstream 442144 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA downstream 442144 13315229 ~ 13466961 (+) True G11740
XR_006253121.1 lncRNA downstream 495508 13368593 ~ 13410609 (+) True LOC122362453
TU17383 lncRNA downstream 591429 13464514 ~ 13466961 (+) False G11740
XM_043261339.1 mRNA upstream 927 12863865 ~ 12867056 (+) True buc
XM_043264411.1 mRNA upstream 77876 12785128 ~ 12790107 (+) False tmem68
XM_043264420.1 mRNA upstream 77876 12785150 ~ 12790107 (+) True tmem68
XM_043264429.1 mRNA upstream 77876 12785158 ~ 12790107 (+) False tmem68
XM_043263907.1 mRNA upstream 128145 12699932 ~ 12739838 (+) True zswim5
XM_043256894.1 mRNA downstream 30047 12903132 ~ 12904941 (+) True mc4r
XM_043253826.1 mRNA downstream 254326 13127411 ~ 13146799 (+) True cdh10a
XM_043254324.1 mRNA downstream 301058 13174143 ~ 13213126 (+) True cdh12a
XM_043263883.1 mRNA downstream 386658 13259743 ~ 13298145 (+) True cdh18a
XM_043222213.1 mRNA downstream 538211 13411296 ~ 13423163 (+) True LOC122326989
TU17183 other upstream 241596 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 586479 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 587324 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 587969 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 930393 11908073 ~ 11937590 (+) False pld1a
TU17566 other downstream 1302279 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1302279 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1903237 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1903237 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 3393958 16267043 ~ 16268797 (+) True G12531

Expression Profile