RNA id: XM_043253375.1


Basic Information

Item Value
RNA id XM_043253375.1
length 1597
RNA type mRNA
GC content 0.46
exon number 3
gene id rnf152
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12867929 ~ 12874008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGCTGCGCTGAGGGAGTAGCGGAGAACGTTTACAGAACAGCCTTTGAAGAAGGCAGAGTGAAGTATGACAGATGAGTCTTGCTCTGCACGCGATGTTCACCGTTTGCATAGATGAAAACACCTCACGACGTACAAGaGCCATTTCATCATTAGATGGGGAAAGATATTCCTGTGAACTGCTTTTATTTCCAACTGCGCTCATCGAATGATTCAAAGCCCTGCTTGGATCTATACTAAACCCATGGCCGAGCCAGACGTGGATTAAAACGCTGAAGGCCCCAATCGGCGCGGAGCGGTTGACGGAGAAGTGCATTGGTGATACAAATCGACAAGAATACTGTCATTAAAGCAAGCGAAGAGCGTTTTAAAGATGATGGACACCTTGTCCCAGAACTCCAGGCTTGAGTGCCAGATATGTTTCAACTACTTCAGCCAATGGCGCCGTCCTAAACTCCTGCACTGCCAGCATACCTGCTGCTCCGTGTGTCTGAGCCAGATGAGGCTCAGCCAGAGAGAGCTCCGCTGTCCTTGGTGTCGTTGCGTGACGCAGATCCCCAACGGACTTTCCGTTTCCCATCTTCCAGACGACCCGGAAGTACTTTCCATTATCAGTCTGTCACACTCCTCCGAACACACTCCCATCTTTATACACTTGCCCAACAGCAGCTGTTACCTGCTGCCCGTCCCTCTGGACACCGATGAGGCTTTGCTTCCCGGACAGCCGGCGTGCCGGTTTGTCCCTAAAAGTGTTGGGGGGTTAAACGTCTCTGACGGGGGGAGCCTCGGGCTGGGGGACGACGCAGGTGAGGAggggatggaggaggaggaggaggaggtggaggaggtggtggCGGTTAAAAACACGGCTTGGACGGGGGTTTGCACTGTGCTACTGGTggcattcattttgatttttttgcttgGGATCGTGTTGCATAACATGTCCTGCGTGTCCAAACGCTTCACTATTATTTCCTGCGGGTGAGACGGGTTCATGAAATTCACTTGTGAGGGACCGATTATTGGTTTGGAATCTCTTCTGATTTCAGATGTGATTGTGATCTATGTATATCACATAGCTATGGtgacttgtgtgtgtatatatgatgGATGAGAAGAAGGGAATGAAAGAAGTCAAGGGCACAATCTATGCAATTTGTGGTATTTCAGAAGTCTTTGAAAGCCCTGATTTGTTAATTTGTTGGGAATTTGTTCAGATAATGTGCAGAAATGTCGTTAAAGAATCTAGCAGTATTGACTCTGTATTTGCATGTCTTGTATGTACCTGAGGGAAATTAACTTGGTCTGTAATACTACAGTAGAGCTGTGCGTTATTGACAGTCTGTAGGAGTTTGTGACTGAACACTAAATGTAGAAATGAAACTGCATATTGCTACATAAATGGCTGCACTGcctttaaatgctgtttattgctGTGTTGGATTGCTGTATGTTTTAAGGTGTTTAAGCTAAGcggtttctttaaaaattccacaaatcaaatgtttttatggtaagaaactgttcctttttttttttttttttttactaatggGTTCTGACTTTGCATTTGATTAAAAGAGTGAAAACATCA

Function

GO:

id name namespace
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15705 RNF152; E3 ubiquitin-protein ligase RNF152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253165.1 lncRNA upstream 54602 12809072 ~ 12813327 (+) True LOC122362827
TU17212 lncRNA upstream 108038 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA upstream 108038 12745812 ~ 12759891 (+) False G11622
TU17208 lncRNA upstream 170635 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 242977 12623829 ~ 12624952 (+) False LOC122358236
TU17386 lncRNA downstream 441221 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA downstream 441221 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA downstream 441221 13315229 ~ 13466961 (+) True G11740
XR_006253121.1 lncRNA downstream 494585 13368593 ~ 13410609 (+) True LOC122362453
TU17383 lncRNA downstream 590506 13464514 ~ 13466961 (+) False G11740
XM_043261339.1 mRNA upstream 873 12863865 ~ 12867056 (+) True buc
XM_043264411.1 mRNA upstream 77822 12785128 ~ 12790107 (+) False tmem68
XM_043264420.1 mRNA upstream 77822 12785150 ~ 12790107 (+) True tmem68
XM_043264429.1 mRNA upstream 77822 12785158 ~ 12790107 (+) False tmem68
XM_043263907.1 mRNA upstream 128091 12699932 ~ 12739838 (+) True zswim5
XM_043256894.1 mRNA downstream 29124 12903132 ~ 12904941 (+) True mc4r
XM_043253826.1 mRNA downstream 253403 13127411 ~ 13146799 (+) True cdh10a
XM_043254324.1 mRNA downstream 300135 13174143 ~ 13213126 (+) True cdh12a
XM_043263883.1 mRNA downstream 385735 13259743 ~ 13298145 (+) True cdh18a
XM_043222213.1 mRNA downstream 537288 13411296 ~ 13423163 (+) True LOC122326989
TU17183 other upstream 241542 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 586425 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 587270 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 587915 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 930339 11908073 ~ 11937590 (+) False pld1a
TU17566 other downstream 1301356 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1301356 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1902314 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1902314 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 3393035 16267043 ~ 16268797 (+) True G12531

Expression Profile