RNA id: TU17389


Basic Information

Item Value
RNA id TU17389
length 2466
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G11740
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13315229 ~ 13466961 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttagtttaaaatatattcatttattgctGATAAAATCTCTAATATATGACtgatttacatataatatttgttCACAATACTGCTCAATTTAAGTCAGAAAAATCTATATCATAGTATCTATGGCAGAACATCATGGTACAACATTCCTAAAACAATTCTAAACGCTAATCCCTTGAAATTCtcttgataaataataaAAAACAATTCTAAACGCTAATCCCTTGAAATTCtcttgataaataataaaaaacactttagcaACAACATATTGCTGTTAATAAGTGCTTTCCTGCAGGTATTCCAGCATCAATACGTCTGATCAGTTACACATTTAACTGACATTCATCCATTGccataaacacaaaaagaacCATGATGTCTTTCCTATTAAATAACATGGAGTATAGTGCAGTTCTGCATAGCTAGAAATAAAGCACAAAGTGGAGCGATCAAAGATAGACTGGGATCATTTGGAAGTAAAATAGTAGTCCAGTTCACTTAAAACTGCAAAGAAAATGGGTAACAAACCACTGTTTCTACAGCTGGGGCTGCCATTGCTATTAAGCACTGAGTATATAagcattttaatactatttctcgtgttaaataataatataagcaaTTCACGACAGAAATAGACAGTTTTAGAAGCTCAGATCCAGCTTTCTTGTTATCAACACTGCAATGTAAGCAAGGGCCTGGGTTGCGATATTTCAGTAGCAATTTCACTGGGAATGTTTTTGCGAACCAGTCAAAAGCACCATGATCAGAAGGCAGAGGGAGGGTTGTGGCATCAATACTGCTGTTTACTTGAAGGATGCACGGACTTTGCGTCCCTTGAGAGGTTGAGGGGGTCTGTAGTTGTCAACCATGCAGCAAGGTGCCTCTCCTTCAGATGTGAACAACAGGCTACGGAATTTAGCCATCTGaagaacagacagacagaaatatttttctttgattGTGGTGTTTAGTGTGTTGCTGGCAGTCTTGTGGAGCCTTATTACAGCCTGTATTAACTATATTTAGCTCCATGCTCATTCATAGAGCACTTGCCAGAATTCCCGTGCAGTTGTTAGACTGTTTTGACTAACCACTGGAGGCTAAAATAAGCTCTGCAGGCTAACAGCACTGCCTACAGCAGGGAAAGGTATTGAATGgggcacttttttttatttatttgttttttgtaaagcaAAAATGTCACTCAATATGATCCTGCTGAAGCAGCGTTTATAAGACAAGCTGTAATTCTAATATGTCAATTCTATGTCTTGATTCTAAATCAATTCTAATATGTTTGGTGCTCAAGTATGTTCACATGCAGAATGtgaataaaaatcttactgaacggtattgtatattataatatttgcatatatttggtGTTACTATAcaggaaatgtatttattattttataatatattaaatattcagtgtGGTGTATCACCAGTAAAATGGGTGTAGGATAATACTTATTGCTGAATTACAACTGCACTTTCTTGTTTtgcttattgctttaataaataaaatgtataaaaacaagaATAGACTGCAGTGAAGGGCAAATTGATCTCCATTAATGAACATATGGGTGTTGGCACAATCTTAAAGGCACAAGCCTGACTTAAATATGATACTTGTTGTCAGGCAAgcaatatatttaagataaagTAATCTTGTAGAAACAGAAACATATGGAGCACCGACCCTCCCTGTTTCGAAGTAGGAGTGACGTTTAATGTTGGGACCTCATTAGTGTTATTGCAATACTAAACCAACAGTATTTGATTTGGGTGTTTATTAACTTATTGTCAACTCAATAGGTAGCAAAGACAttataaagtaacaaaaaaacatatggaCCTAATCATGTTTCAATGACCCAAGATATGGACTAGATATTTCTGTATATAACTGTTGAAAATGTGAAAGCATAAATAAAGTATGATGAAAAGTACCTGAGCAGGACTAACACTGATTGGCTCTTTCAGAACGATCCAGGTGACGCTCTCCAGAAGAGGAGGTGTGGTCAGAGAGCCCTCGTAAGTCCAGAAATCCAGAGAGGCGGGCAGCAAGGTTTTAGGATCGAAGTTGCTAAATGTAGTCTGTCTGCCCTGGAGAAAAAACAGAATGTTGTAAAAGACTAAAAACATCTGAGGGGAACCGGGACGAATGAATAAATACCTTTGATTTGATGTCATCAAGAGCATCTAGAACTTTCTGAAGTCTTGGATTGGCAGAACCAATctgggaataaaaaaaacacacaacagatccatcatttgaaatcatttaatcACTGCAATTCCTGAAACTCTTTTGGGAAAAATCCTGACCTTCAGAAAAACCCCAACCACAGCAAGGCCATCAGGTTTATTGGCAGCTTCGCCAAAGTTTGGGTATTTGGTGTTCCAGTGAACGAGATGAAGCTTTAGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253165.1 lncRNA upstream 501902 12809072 ~ 12813327 (+) True LOC122362827
TU17212 lncRNA upstream 555338 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA upstream 555338 12745812 ~ 12759891 (+) False G11622
TU17208 lncRNA upstream 617935 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 690277 12623829 ~ 12624952 (+) False LOC122358236
TU17458 lncRNA downstream 227358 13694319 ~ 13701326 (+) True G11779
TU17503 lncRNA downstream 437607 13904568 ~ 13917191 (+) True G11812
TU17521 lncRNA downstream 527830 13994791 ~ 13995373 (+) True G11823
TU17513 lncRNA downstream 535584 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA downstream 581756 14048717 ~ 14051620 (+) True G11836
XM_043263883.1 mRNA upstream 17084 13259743 ~ 13298145 (+) True cdh18a
XM_043254324.1 mRNA upstream 102103 13174143 ~ 13213126 (+) True cdh12a
XM_043253826.1 mRNA upstream 168430 13127411 ~ 13146799 (+) True cdh10a
XM_043256894.1 mRNA upstream 410288 12903132 ~ 12904941 (+) True mc4r
XM_043253375.1 mRNA upstream 441221 12867929 ~ 12874008 (+) True rnf152
XM_043253272.1 mRNA downstream 368257 13835218 ~ 13892685 (+) True dlgap1a
XM_043219234.1 mRNA downstream 435949 13902910 ~ 13904250 (+) True ptf1a
XM_043216932.1 mRNA downstream 472309 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043216938.1 mRNA downstream 484372 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA downstream 498836 13965797 ~ 13992324 (+) False si:ch211-207d6.2
TU17265 other upstream 442084 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 442144 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 688842 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1033725 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1034570 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 708403 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 708403 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1309361 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1309361 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2800082 16267043 ~ 16268797 (+) True G12531

Expression Profile