RNA id: TU17458


Basic Information

Item Value
RNA id TU17458
length 379
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G11779
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13694319 ~ 13701326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgggatttatgttttaaaggatttatgttttacaggttttacacaatagaagcactgtgcccaggcctcataaaggctctgtgtttttccatttcgatattatgtgtgtatgtgctgtacaaaatgtcttatctacagaaacaagatatggagactactgagctcatctactggtcgagaagaaacaactgcacctggttctgtgaaggacaccctgaatgggaggaagacccaagcacaagaatataaatattgtgtgaaatgtagtgtgagcatacaggactgccctgcatgccttgatgctgttgttctgtatcctgagctcagtctcaattattctgactttattaaacttaagattttaaatttaagagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17386 lncRNA upstream 227358 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA upstream 227358 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA upstream 227358 13315229 ~ 13466961 (+) True G11740
TU17383 lncRNA upstream 227358 13464514 ~ 13466961 (+) False G11740
XR_006253121.1 lncRNA upstream 283710 13368593 ~ 13410609 (+) True LOC122362453
TU17503 lncRNA downstream 203242 13904568 ~ 13917191 (+) True G11812
TU17521 lncRNA downstream 293465 13994791 ~ 13995373 (+) True G11823
TU17513 lncRNA downstream 301219 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA downstream 347391 14048717 ~ 14051620 (+) True G11836
XR_006252504.1 lncRNA downstream 390238 14091564 ~ 14098847 (+) True LOC122357607
XM_043222213.1 mRNA upstream 271156 13411296 ~ 13423163 (+) True LOC122326989
XM_043263883.1 mRNA upstream 396174 13259743 ~ 13298145 (+) True cdh18a
XM_043254324.1 mRNA upstream 481193 13174143 ~ 13213126 (+) True cdh12a
XM_043253826.1 mRNA upstream 547520 13127411 ~ 13146799 (+) True cdh10a
XM_043256894.1 mRNA upstream 789378 12903132 ~ 12904941 (+) True mc4r
XM_043253272.1 mRNA downstream 133892 13835218 ~ 13892685 (+) True dlgap1a
XM_043219234.1 mRNA downstream 201584 13902910 ~ 13904250 (+) True ptf1a
XM_043216932.1 mRNA downstream 237944 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043216938.1 mRNA downstream 250007 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA downstream 264471 13965797 ~ 13992324 (+) False si:ch211-207d6.2
TU17265 other upstream 821174 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 821234 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1067932 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1412815 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1413660 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 474038 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 474038 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1074996 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1074996 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2565717 16267043 ~ 16268797 (+) True G12531

Expression Profile