RNA id: TU17521


Basic Information

Item Value
RNA id TU17521
length 355
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G11823
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13994791 ~ 13995373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattcagattttattgcAAAACCATAAAAGGGGCAAACATTTATCACAGTAAAAACATAGCTTTgccttcatttaaaacaacaattacaaaTAACAGTAATTTATTTAGATTCACTGTTACTTTGTTTACAAAACCggtaacaaattatttattaaatcaagtaataaaatacaaacattgaAATATAACATGACTGTACACTAAAATTTAATAAGTAACCTTTAGCGTTGATCCAGAAGAGGGCACGAGCAGTCATATAATATTCATGTCCTTACAAGGACATCATGTGAATTTatATGATTCATAATCCAAGGTTTGAGTCAGCACCCCCGTCAATATGAGCTCAGCAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17503 lncRNA upstream 77600 13904568 ~ 13917191 (+) True G11812
TU17458 lncRNA upstream 293465 13694319 ~ 13701326 (+) True G11779
TU17389 lncRNA upstream 527830 13315229 ~ 13466961 (+) False G11740
TU17513 lncRNA downstream 7172 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA downstream 53344 14048717 ~ 14051620 (+) True G11836
XR_006252504.1 lncRNA downstream 96191 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA downstream 96191 14091564 ~ 14098847 (+) False LOC122357607
TU17546 lncRNA downstream 101466 14096839 ~ 14098518 (+) False LOC122357607
XM_043216938.1 mRNA upstream 2467 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA upstream 2467 13965797 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216932.1 mRNA upstream 4290 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043219234.1 mRNA upstream 90541 13902910 ~ 13904250 (+) True ptf1a
XM_043253272.1 mRNA upstream 102106 13835218 ~ 13892685 (+) True dlgap1a
XM_043220658.1 mRNA downstream 13710 14009083 ~ 14015895 (+) True htr5aa
XM_043256021.1 mRNA downstream 40143 14035516 ~ 14039174 (+) True en2b
XM_043224053.1 mRNA downstream 56380 14051753 ~ 14075443 (+) True rbm33b
XM_043219771.1 mRNA downstream 103977 14099350 ~ 14105505 (+) True dnajb6a
XM_043216903.1 mRNA downstream 122113 14117486 ~ 14136011 (+) True kcnb2a
TU17265 other upstream 1121646 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1121706 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1368404 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1713287 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1714132 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 179991 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 179991 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 780949 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 780949 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2271670 16267043 ~ 16268797 (+) True G12531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU835191 True 319 lncRNA 0.34 2 NC_048572.1 65389601 ~ 65390041 (+)