RNA id: TU17537


Basic Information

Item Value
RNA id TU17537
length 2056
lncRNA type read_through
GC content 0.39
exon number 3
gene id G11832
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14136114 ~ 14185786 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACAGATGTAGCATCTTTGCAAAGACTTCAGGAGACACTCGCTTCACAGTATATCACATTAGCAGACTAAAATGTCATAATAAAGAGATGCCaagaaatacactttaaaaccagtgtttgtgtaaatgattttattttttcagaccAACAgcaaaaatgttccaaaaaacCTGTAAGagaccaaaacattttagattCAAAGTCTGACTTGAGAAGGGCAATTAGTACAAAGTACAAAGATTTTTCTGCcttcacatttaaatgaattattatttaattcccAACAGGCCTTAAGAGGAtatttaaaccacaaaaaaatctGCACAATTTGAGAGCTCTCACACTATGTGGTTAATCAGTAAAATGATAAACATGACTATCATTCAAGTAATGGCTAAATATCATTTTCTAAATGAATATTACAGTGAACTGCTTCCATTAATATCAGACTTCTGAGCTCAGCTGCTCACCTAATGGTCTTAGTTCATCCTCCTGACGAGCCTGTTGATCTGGTCCTCCCTGTTTCCTGCATCACCTCCCTCAACAAAGTGGGTGGTTTTCTTGTTCATGCCACCACGAGGGGAGGACAGTTTGAATGGCCAAAGGAAGTTGTTTGCATACTTGAAGTTCTTTCCAACAGTGTAGATCTCGTGGATGAGATCCTCAACACAGATGATTCCGCAACGACCTGGAGAGATACAAATCATGTGACTGCACATTAGGCATTACACGAGTGTGTTTTAATCAGGGTGTGCAATGGTTCATCCTTACCAAGGGACCTCTCGATCAGGGAGTTGTCTGTCAGCGGGATGCGCTGCTTCCTGATCTTGCCATACCCACGCTTGTACACAAGCTCACGCACAGATTTAAGGTTGGGGtaactgaaaacaaaatcaatatggAATTTTAACAAGCATAGAGAAGGACATGTAAGGTACAATGTCACAGAcctatagttcacccaaaaatgaagtcTTCCTCCCAAGTTACTCAAGTGACAACGCACCAAATCTGGCACACTATTAGAAGTCTTCTGAAGCAATGCAACAGATCAGCGCAAGAAAAGCTAAAAGCCAGAGTTCTTACAGCCATTGTATTATAAGAAAAGTTAGTAACACTTGTTatctacgacttttccctccaatttttaatttgctgcttattatttgttaaatttaggtcTGGGGAATAGTAGAAACTTAGAATAAGATCATGTAGAATAAGAATGTGTGCTTAAATTAGCAGTAAATGGATAAAATTCTAATACCAAgcataagcaactaataggtttaactaaaaaaaaaaaactattgaaaagTTCTTAAACTTCCTTTCCatacaaatggaaaaaaagtgattaaactAGTTTGAAGTAATGAGGATGAACAAGCAGCTTTCATTTCTGAGCAATGTgtatattaccatttaaaaaagtaGCTAATTTCACGCCTTTGGCATTCAAGGCATTGGTttacttcaaaacaataaagatGCACAAAATTCATAATATTGCTATATAAagtgcatgttattttaaaatgcactattCCAGTGATGGCTCAAATCATCATGCTGATCTGAAACTCAAACATTCAAATGTTGCAAACAGTTATCCCCCGGATaacttaatttcttaaatatctttcaaaacagttttgtgCCTTTCACCACAAGACAGCTGCAAATACACCATGGACATTAACAATTTATACATTATCAACCCAAAACACATCTACATACCCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGAGGCCTTGTTCAGTTTCACAAAGACACCGTTGAAGATCTGGCGGAGACGGAGCAACTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCGAATGACAAACGCCAACTTGGGCTCAGCTGGGACGTAGTAGTTGCCTGCCTTGCGAGCCATCCTGCTCATGCGGATTTCACGCCGGTACATCTGCTTGTATTCTTTGTGATAAGCTTCAGCTCTCTTGAAGATGAGCTTTCTGGTGACTTTGCCTGCCTTTTAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252504.1 lncRNA upstream 37267 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA upstream 37267 14091564 ~ 14098847 (+) False LOC122357607
TU17546 lncRNA upstream 37596 14096839 ~ 14098518 (+) False LOC122357607
TU17513 lncRNA upstream 68019 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA upstream 84494 14048717 ~ 14051620 (+) True G11836
TU17629 lncRNA downstream 183902 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 186132 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 203199 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 309664 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 374074 14559860 ~ 14603545 (+) True G11914
XM_043216903.1 mRNA upstream 103 14117486 ~ 14136011 (+) True kcnb2a
XM_043219771.1 mRNA upstream 30609 14099350 ~ 14105505 (+) True dnajb6a
XM_043224053.1 mRNA upstream 60671 14051753 ~ 14075443 (+) True rbm33b
XM_043256021.1 mRNA upstream 96940 14035516 ~ 14039174 (+) True en2b
XM_043220658.1 mRNA upstream 120219 14009083 ~ 14015895 (+) True htr5aa
XM_043257000.1 mRNA downstream 4683 14190469 ~ 14194710 (+) True pi15b
XM_043219197.1 mRNA downstream 9773 14195559 ~ 14203218 (+) True crispld1b
XM_043220352.1 mRNA downstream 28708 14214494 ~ 14218551 (+) True socs6b
XM_043254388.1 mRNA downstream 48033 14233819 ~ 14241872 (+) True LOC122355826
XM_043257269.1 mRNA downstream 56887 14242673 ~ 14244944 (+) True atpsckmt
TU17265 other upstream 1262969 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1263029 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1509727 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1854610 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1855455 12280590 ~ 12280659 (+) True LOC122328989
XR_006252462.1 other downstream 590536 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 590536 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2081257 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2846533 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 3176459 17362245 ~ 17367861 (+) False sppl2

Expression Profile