RNA id: TU17538


Basic Information

Item Value
RNA id TU17538
length 2247
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G11832
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14136114 ~ 14185786 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACAGATGTAGCATCTTTGCAAAGACTTCAGGAGACACTCGCTTCACAGTATATCACATTAGCAGACTAAAATGTCATAATAAAGAGATGCCaagaaatacactttaaaaccagtgtttgtgtaaatgattttattttttcagaccAACAgcaaaaatgttccaaaaaacCTGTAAGagaccaaaacattttagattCAAAGTCTGACTTGAGAAGGGCAATTAGTACAAAGTACAAAGATTTTTCTGCcttcacatttaaatgaattattatttaattcccAACAGGCCTTAAGAGGAtatttaaaccacaaaaaaatctGCACAATTTGAGAGCTCTCACACTATGTGGTTAATCAGTAAAATGATAAACATGACTATCATTCAAGTAATGGCTAAATATCATTTTCTAAATGAATATTACAGTGAACTGCTTCCATTAATATCAGACTTCTGAGCTCAGCTGCTCACCTAATGGTCTTAGTTCATCCTCCTGACGAGCCTGTTGATCTGGTCCTCCCTGTTTCCTGCATCACCTCCCTCAACAAAGTGGGTGGTTTTCTTGTTCATGCCACCACGAGGGGAGGACAGTTTGAATGGCCAAAGGAAGTTGTTTGCATACTTGAAGTTCTTTCCAACAGTGTAGATCTCGTGGATGAGATCCTCAACACAGATGATTCCGCAACGACCTGGAGAGATACAAATCATGTGACTGCACATTAGGCATTACACGAGTGTGTTTTAATCAGGGTGTGCAATGGTTCATCCTTACCAAGGGACCTCTCGATCAGGGAGTTGTCTGTCAGCGGGATGCGCTGCTTCCTGATCTTGCCATACCCACGCTTGTACACAAGCTCACGCACAGATTTAAGGTTGGGGtaactgaaaacaaaatcaatatggAATTTTAACAAGCATAGAGAAGGACATGTAAGGTACAATGTCACAGAcctatagttcacccaaaaatgaagtcTTCCTCCCAAGTTACTCAAGTGACAACGCACCAAATCTGGCACACTATTAGAAGTCTTCTGAAGCAATGCAACAGATCAGCGCAAGAAAAGCTAAAAGCCAGAGTTCTTACAGCCATTGTATTATAAGAAAAGTTAGTAACACTTGTTatctacgacttttccctccaatttttaatttgctgcttattatttgttaaatttaggtcTGGGGAATAGTAGAAACTTAGAATAAGATCATGTAGAATAAGAATGTGTGCTTAAATTAGCAGTAAATGGATAAAATTCTAATACCAAgcataagcaactaataggtttaactaaaaaaaaaaaactattgaaaagTTCTTAAACTTCCTTTCCatacaaatggaaaaaaagtgattaaactAGTTTGAAGTAATGAGGATGAACAAGCAGCTTTCATTTCTGAGCAATGTgtatattaccatttaaaaaagtaGCTAATTTCACGCCTTTGGCATTCAAGGCATTGGTttacttcaaaacaataaagatGCACAAAATTCATAATATTGCTATATAAagtgcatgttattttaaaatgcactattCCAGTGATGGCTCAAATCATCATGCTGATCTGAAACTCAAACATTCAAATGTTGCAAACAGTTATCCCCCGGATaacttaatttcttaaatatctttcaaaacagttttgtgCCTTTCACCACAAGACAGCTGCAAATACACCATGGACATTAACAATTTATACATTATCAACCCAAAACACATCTACATACCCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGAGGCCTTGTTCAGTTTCACAAAGACACCGTTGAAGATCTGGCGGAGACGGAGCAACTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCGAATGACAAACGCCAACTTGGGCTCAGCTGGGACGTAGTAGTTGCCTGCCTTGCGAGCCATCCTGCTCATGCGGATTTCACGCCGGTACATCTGCTTGTATTCTTTGTGATAAGCTTCAGCTCTCTTGAAGATGAGCTTTCTGGTGACTTTGCCTGCCTTCTTGCTTCAGAGCAAGATTATTAAGAAAGCTGCCAGTGTTACACAGCCTTACAAAACCTGACAGTTCATTCACTGACGGCTCAGTGAATAAAAGCCAACCAAAGTGACGCCTCTCCGTGGATTAGATAACTCTATTTTCAGCCTAAATACCAGCAAACAATAAAGAGCCCCTTGTACAAACTCAAAAAGTATGCAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252504.1 lncRNA upstream 37267 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA upstream 37267 14091564 ~ 14098847 (+) False LOC122357607
TU17546 lncRNA upstream 37596 14096839 ~ 14098518 (+) False LOC122357607
TU17513 lncRNA upstream 68019 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA upstream 84494 14048717 ~ 14051620 (+) True G11836
TU17629 lncRNA downstream 225411 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 227641 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 244708 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 351173 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 415583 14559860 ~ 14603545 (+) True G11914
XM_043216903.1 mRNA upstream 103 14117486 ~ 14136011 (+) True kcnb2a
XM_043219771.1 mRNA upstream 30609 14099350 ~ 14105505 (+) True dnajb6a
XM_043224053.1 mRNA upstream 60671 14051753 ~ 14075443 (+) True rbm33b
XM_043256021.1 mRNA upstream 96940 14035516 ~ 14039174 (+) True en2b
XM_043220658.1 mRNA upstream 120219 14009083 ~ 14015895 (+) True htr5aa
XM_043255093.1 mRNA downstream 7789 14152066 ~ 14153672 (+) True tmem70
XM_043257000.1 mRNA downstream 46192 14190469 ~ 14194710 (+) True pi15b
XM_043219197.1 mRNA downstream 51282 14195559 ~ 14203218 (+) True crispld1b
XM_043220352.1 mRNA downstream 70217 14214494 ~ 14218551 (+) True socs6b
XM_043254388.1 mRNA downstream 89542 14233819 ~ 14241872 (+) True LOC122355826
TU17265 other upstream 1262969 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1263029 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1509727 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1854610 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1855455 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 31087 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 31087 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 632045 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 632045 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2122766 16267043 ~ 16268797 (+) True G12531

Expression Profile