RNA id: TU17543


Basic Information

Item Value
RNA id TU17543
length 517
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G11836
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14048717 ~ 14051620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGTTTCAccaagttttattattttggaaaaCTAGCAATATTATTCCATAATAGAAACCAACAGGgctttttttgaaagaatctTAGTCCCGCAAAGTGACCAGAATGgaatacacatttaaattgtaCAGTTACCATTCAAATTAACTTCGGAATCCTCGGAAAaaacttACCTGAACAGTACAATGCTTCATCCTTCTTTGACTCTGTCGTACTGGGCAACATGAACACTGCCGCAAGAACAAGGCAAACCTGTTTAATCCATGGTGACATGCTGATCTCCTGACTGAGACGCTACGTGTGTTACAACGAGAGGTGAGCGAGGCACGGGGAAAAGTTTTCGttgctacaaaaaaatattgagaagaAAGAGCACACGAGCTCGGCACCCCGTTAGCTTACACAAAAACTCCCGACAGTCTGTCTGAAAAATGAAGTACAAATGCGCTTCCTATACTAAAAGCAAAGACCATCTACGTGCCGGTTTGTCGTGCTGCCACGACCAGCAACCTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17521 lncRNA upstream 53344 13994791 ~ 13995373 (+) True G11823
TU17503 lncRNA upstream 131526 13904568 ~ 13917191 (+) True G11812
TU17458 lncRNA upstream 347391 13694319 ~ 13701326 (+) True G11779
TU17383 lncRNA upstream 581756 13464514 ~ 13466961 (+) False G11740
XR_006253121.1 lncRNA upstream 638108 13368593 ~ 13410609 (+) True LOC122362453
XR_006252504.1 lncRNA downstream 39944 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA downstream 39944 14091564 ~ 14098847 (+) False LOC122357607
TU17546 lncRNA downstream 45219 14096839 ~ 14098518 (+) False LOC122357607
TU17582 lncRNA downstream 56535 14108155 ~ 14166955 (+) True G11856
TU17576 lncRNA downstream 80139 14131759 ~ 14150859 (+) False G11855
XM_043256021.1 mRNA upstream 9543 14035516 ~ 14039174 (+) True en2b
XM_043220658.1 mRNA upstream 32822 14009083 ~ 14015895 (+) True htr5aa
XM_043216938.1 mRNA upstream 56393 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA upstream 56393 13965797 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216932.1 mRNA upstream 58216 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043224053.1 mRNA downstream 133 14051753 ~ 14075443 (+) True rbm33b
XM_043219771.1 mRNA downstream 47730 14099350 ~ 14105505 (+) True dnajb6a
XM_043216903.1 mRNA downstream 65866 14117486 ~ 14136011 (+) True kcnb2a
XM_043216912.1 mRNA downstream 87857 14139477 ~ 14141857 (+) True rdh10b
XM_043255093.1 mRNA downstream 100446 14152066 ~ 14153672 (+) True tmem70
TU17265 other upstream 1175572 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1175632 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1422330 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1767213 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1768058 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 123744 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 123744 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 724702 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 724702 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2215423 16267043 ~ 16268797 (+) True G12531

Expression Profile