RNA id: TU17546


Basic Information

Item Value
RNA id TU17546
length 950
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122357607
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14091564 ~ 14098847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGACTTCTCTTATCACTTCCTCCTGCAGCGGGTGAATGAGCACAAAATTATGAATAAGGACAAAGAGAATCATTCATAAAAATGTGCTGGAAAAGGAGACCAGCCGCTCTTGGGTGTGCAGTGAtttataaaagtgattttctgCCAGACTGATGCCTGAGGTCTGAGGTCTTGTGAAGCCCTCAAGTGGTGAGgcctCTCCATCCCTCTGATGAAGCACTTAGCCCACTTCTATTTATAGCAGCAAGAGCGGCACGATCGATTATTCAACCTGACTCTGATTCTGCCTTCTCATGAACTGTTATTCAATAACCACGGATAAAATTAGACATTGCCATCCTGAGGGGACAAATGGCActgagcgaaagagagagattgTAGAATGTATGGCTGTGAATAGCAGGTCGAGATTTCCTTGTCTCGATAGGCTGCAGTCGAAAAAACTTCTGCATCCTGCACAGCTGGACAGCAGTACCTGGATGTGTAGCTAACATGAAGCAGCACTTCCTCTGTTTCGCTTTTCATTGCGGAAACGGCTACGAGAAATAAACAAGGCACAGACAGACATAAAAGAGACTGGAGTTAATGGTTACCTCTGCTGCACTCTTGTCTAATCATGCCCCTTTAtcagtataaaaatacaaattcccATTGCCAAAATGACGGTTGCCTTTTCCTTTAAGCTGGCAGTAAATTTTATTGAAACAACTGAGATGATTAACCTCTGATAGTATCCTAATGGAAACTCTCTGGCACCTCGCACACGGATTAATGCCAAGAGGAACCTCcaattcataatttttatttgaaatgggaCACCCATCTGCATACGGACTGATGGGTTTGGACAGGGCACTTGCTGTTGAACCGCTAACAGGCTTAGCTTAATGAGATGCAGATGAATGTCAGTGACAAGGCTTAAGACCAGCACCTGTTGTCTGAGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17513 lncRNA upstream 28744 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA upstream 45219 14048717 ~ 14051620 (+) True G11836
TU17521 lncRNA upstream 101466 13994791 ~ 13995373 (+) True G11823
TU17503 lncRNA upstream 179648 13904568 ~ 13917191 (+) True G11812
TU17458 lncRNA upstream 395513 13694319 ~ 13701326 (+) True G11779
TU17582 lncRNA downstream 9637 14108155 ~ 14166955 (+) True G11856
TU17576 lncRNA downstream 33241 14131759 ~ 14150859 (+) False G11855
TU17537 lncRNA downstream 37596 14136114 ~ 14185786 (+) False G11832
TU17538 lncRNA downstream 37596 14136114 ~ 14144277 (+) True G11832
TU17577 lncRNA downstream 41532 14140050 ~ 14164377 (+) True G11855
XM_043224053.1 mRNA upstream 21396 14051753 ~ 14075443 (+) True rbm33b
XM_043256021.1 mRNA upstream 57665 14035516 ~ 14039174 (+) True en2b
XM_043220658.1 mRNA upstream 80944 14009083 ~ 14015895 (+) True htr5aa
XM_043216938.1 mRNA upstream 104515 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043219771.1 mRNA downstream 832 14099350 ~ 14105505 (+) True dnajb6a
XM_043216903.1 mRNA downstream 18968 14117486 ~ 14136011 (+) True kcnb2a
XM_043216912.1 mRNA downstream 40959 14139477 ~ 14141857 (+) True rdh10b
XM_043255093.1 mRNA downstream 53548 14152066 ~ 14153672 (+) True tmem70
XM_043257000.1 mRNA downstream 91951 14190469 ~ 14194710 (+) True pi15b
TU17265 other upstream 1223694 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1223754 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1470452 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1815335 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1816180 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 76846 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 76846 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 677804 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 677804 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2168525 16267043 ~ 16268797 (+) True G12531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU35253 True 1248 lncRNA 0.39 2 CI01000004 10676417 ~ 10681007 (-)