RNA id: TU17573


Basic Information

Item Value
RNA id TU17573
length 1465
RNA type TUCP
GC content 0.43
exon number 2
gene id G11854
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14175364 ~ 14179615 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGTGGTGTAGGACTGATCTAGAGGAAGTATTAACCTTGAGGTGGCAATTTCTACTTTTGTTCGGGCGATGGCAGACGCTCTTATGGCTCCTTCAACGGCACGGTCCACTTTTTGCTTCGTCTTGGTGTTCTTGAGAGGAATAAGCTGCTTCTTGATGCCGCGCACCAAAacgttatttttgtactttccCTCTTCTTTCGACCCATCGGGGAATATCGTGCACCCATAGCCGTGGCGCTTGTTGTTTATCCATTCGCCTTCGTATTTCATCCCATTGGAGCGCTCGCTGACACCGAACCCATTCCGCTTGTCATTCTTCCACTCGCCCATGTACGACTCGGTGGTGGTGGCATCGACGTTGTCCTCAGCCGGCATGTACTCGTCAGCCACTTCTCCATCGCCGAAACTAATGGTGGAGTTTGCGTCGCTGGAGCTGATGCGGCTCATGGTGGCGTCGCTTCGTGCCGAGCTGCGCTTGCTGGATATGGAAGAACGGGAGTCTGACTTCCTCAGCTGCTTGAGGCTCCCGAAAAGAGAACCCCGTCGGAAAAGGCCCTTTTTTTTGCCGGAGCCCACTTCGCTGTCGCTGTGGAAGTTGAGGACGAAGCCGCCGCGGGTGCCAGCAGGGCTGTCGGACATGTGGTCGTGAAGAACGGACCCGTTGCTCTGCTCGCTGCGGAGGGACGCCAGTGAGGTGCGCAGCGGGGAGCGGATGACAGTGGCCATGCCGTAAGGCACGCTCTGACGTACGCCATAGCCGTGTCGCATGCCGCCCCCCCGTCTCCGTACGTCTCGACCCCATATCCGTCTTGCAGTCCGTTACTCCATGTGCCTTCATACCTGGCAGGTGTATTGAGACTCTGGCGTACCCCGTACCGACCCTTAAATCCGTGACTCCACTCCCCGCGGTACAGCCACCTCCCCTTGGACTCCACGCCGAGCCCGTGCCGTTTCCCCTGCGCCCAGTAGCCCTTGTATGTATTTCCACTGGGCCAGGTGTACACCCCGACTACCTCAAACCCGTTGGACCAGGACCCGGAGTATTCGCCCTGGCCCTTGGGGCCGGTGCAGATGCCGTGTCCGTGGGCTTTTCCGTCCTCCCATCCACCGCAGAAAGTGCCGCCATCGTCGAAGTCGAACCGTCCGCCCGTCATTCAGATGAAGGATCGAAATGAAAGTGTTTGCGTCTCGATGGCAGCTCGTCTGTCGGATGCTCAACAACTACAACGATATAAAAAAAAGGGGGGGTGAATTTCAGACCGCGGGCGCAGTGCTGTGATGCGGTGGTGTCTGCCGGAGATGGCTGAGGGCGCGCATCGGTGCGAGTGTTGGCGGTGAGTGAGAGGGAGGATCGCGCACAGGCGCCGGAGCCGCAGGCGCTGTCACTGTCGCCGTTCCTGGCTTTTTTTTATGATCCTCTCCCCCCTGCTCGCTTCacagggagggagagagagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17582 lncRNA upstream 8409 14108155 ~ 14166955 (+) True G11856
TU17577 lncRNA upstream 10987 14140050 ~ 14164377 (+) True G11855
TU17578 lncRNA upstream 10987 14140050 ~ 14164377 (+) False G11855
TU17576 lncRNA upstream 24505 14131759 ~ 14150859 (+) False G11855
TU17538 lncRNA upstream 31087 14136114 ~ 14144277 (+) True G11832
TU17629 lncRNA downstream 190073 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 192303 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 209370 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 315835 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 380245 14559860 ~ 14603545 (+) True G11914
XM_043255093.1 mRNA upstream 21692 14152066 ~ 14153672 (+) True tmem70
XM_043216912.1 mRNA upstream 33507 14139477 ~ 14141857 (+) True rdh10b
XM_043216903.1 mRNA upstream 39353 14117486 ~ 14136011 (+) True kcnb2a
XM_043219771.1 mRNA upstream 69859 14099350 ~ 14105505 (+) True dnajb6a
XM_043224053.1 mRNA upstream 99921 14051753 ~ 14075443 (+) True rbm33b
XM_043257000.1 mRNA downstream 10854 14190469 ~ 14194710 (+) True pi15b
XM_043219197.1 mRNA downstream 15944 14195559 ~ 14203218 (+) True crispld1b
XM_043220352.1 mRNA downstream 34879 14214494 ~ 14218551 (+) True socs6b
XM_043254388.1 mRNA downstream 54204 14233819 ~ 14241872 (+) True LOC122355826
XM_043257269.1 mRNA downstream 63058 14242673 ~ 14244944 (+) True atpsckmt
TU17265 other upstream 1302219 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1302279 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1548977 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1893860 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1894705 12280590 ~ 12280659 (+) True LOC122328989
XR_006252462.1 other downstream 596707 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 596707 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2087428 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2852704 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 3182630 17362245 ~ 17367861 (+) False sppl2

Expression Profile