RNA id: TU17811



Basic Information


Item Value
RNA id TU17811
length 366
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G12027
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14439743 ~ 14440787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCCATAGCTGCTGCTCCTTTTCACATAAGCAGCATAAGACTGGCGGCTAACAGATGACAGGGAGCCTTGGTGATAGGTGCTCTCATAGCGCGTCTCAAGGTCCCGTTGCTGCTGTTCCTTCTGAAGTTTTAAGGATTCTGACATCCTGAGGTGATTTTTAAATCGGCCCCTTTCTCTTTCTGGTGCAGTCTCAAGTTCCCAATGAAAAGttgcttttccaaaaaaaagggACGAACTCCAAAAAATGAGAAGCCAGTGAAAATCCAGGCACAGCGGCGGGTATGGGGCAGCCGACAGGACGGGACTtcactgaacaaaaataatgctGCCACTCTGCAGATTGCAGCGTCCAGCCAGGACCTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17808 lncRNA downstream 9689 14428911 ~ 14430054 (-) True G12024
TU17756 lncRNA downstream 189203 14249003 ~ 14250540 (-) True G11982
TU17729 lncRNA downstream 245931 14193575 ~ 14193812 (-) True G11969
XR_006252500.1 lncRNA downstream 248634 14190476 ~ 14191109 (-) True LOC122357595
TU17726 lncRNA downstream 250145 14189196 ~ 14189598 (-) True G11966
TU17821 lncRNA upstream 15766 14456553 ~ 14459327 (-) True G12034
TU17858 lncRNA upstream 226946 14667733 ~ 14668539 (-) True G12062
TU17885 lncRNA upstream 250390 14691177 ~ 14699019 (-) True G12082
TU17886 lncRNA upstream 258966 14699753 ~ 14700378 (-) True G12083
TU17887 lncRNA upstream 260521 14701308 ~ 14703493 (-) True G12084
XM_043218575.1 mRNA downstream 743 14436561 ~ 14439000 (-) True myl12.2
XM_043221280.1 mRNA downstream 60008 14370926 ~ 14379735 (-) False rgs20
XM_043221288.1 mRNA downstream 60011 14370926 ~ 14379732 (-) False rgs20
XM_043221295.1 mRNA downstream 64142 14370926 ~ 14375601 (-) False rgs20
XM_043221305.1 mRNA downstream 64187 14370926 ~ 14375556 (-) False rgs20
XM_043219641.1 mRNA upstream 39394 14480181 ~ 14493766 (-) True emilin2a
XM_043224523.1 mRNA upstream 162166 14602953 ~ 14606416 (-) False adcyap1b
XM_043224533.1 mRNA upstream 162166 14602953 ~ 14606398 (-) False adcyap1b
XM_043261388.1 mRNA upstream 194957 14635744 ~ 14641164 (-) True clul1
XM_043261394.1 mRNA upstream 194957 14635744 ~ 14641153 (-) False clul1
XR_006247862.1 other downstream 301594 14138060 ~ 14138149 (-) True LOC122328947
TU17473 other downstream 875414 13560329 ~ 13564329 (-) False LOC122328470
TU17474 other downstream 876441 13560329 ~ 13563302 (-) False LOC122328470
TU17472 other downstream 879478 13559222 ~ 13560265 (-) False LOC122328470
TU17470 other downstream 885124 13553852 ~ 13554619 (-) False LOC122328470
TU17840 other upstream 138208 14578995 ~ 14610266 (-) True adcyap1b
unassigned_transcript_207 other upstream 432289 14873076 ~ 14874382 (-) True LOC122360578
XR_006247132.1 other upstream 681738 15122525 ~ 15127491 (-) False faim2a
XR_006247859.1 other upstream 689812 15130599 ~ 15130715 (-) True LOC122328941
TU18236 other upstream 706417 15147204 ~ 15151772 (-) False smarcd3a

Expression Profile