RNA id: TU17944


Basic Information

Item Value
RNA id TU17944
length 2794
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G12135
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14823161 ~ 14826945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGAAGGTTTTAATTACATTCTGGAGATTGTTCATACAACTATATTTTGCTTATTCTCTTCCGCTCTGACAGACAAACTTGCACAGGCATATAAGGCGATCATATGTGCGTGGCAGCAATCTACTAGTAGAGATATAGAggaacaaatatatttaaattaaaaaaagtgctcaAACTGACACTGATTAGAATCATTTTGTATAGTGCTCATTATAGTCACTGGCAGAAAATCCTGTTCAGCTAATGTGTTATAGGAAGCGTTTGATACATCTCAAAACAAAATTCATAATACATCAGAAGTTTGTTAGAAACACTAAAATTAGATACACACCAAGCACCACTGTGAACAGAAACAGTCTTGGTTATATGTGCGtcttaaaaaagcaaatatgaatattGGGTCAGTTGATAAAAGACTACTCTCTTTCTCACAGAAAGCAGATATTTCGAGTTATGAGAATTAagtgcattttactttttggtTTGCCtttttgtacattattttgttcacccaaaaatagtAACTATTTTCTCAATTCCATGTTTTTCTAAACCTGTTTGAGTTCTGTGTAACACAAGAGAGAATATTCCGTGTAactatttttgttcataaaattacattaatgacaaaacattcatttttgggttaaccaTGAATATTCATATGAATCTCAGTCATAATCTGTTCAACTTTAGTGCCTAGTTGGTTCACTCTAAAAGAAGGTGCAAATTGTAAAAAGCCTAAAACATGACTACCCATGCAAaggattacattacattatccACCGGCTTCTCAAAAatccttaataaaaaaaaaaaaaattacaaaaaaattagaaaacaaaatatttcaaataaaatgacatactCGTTGTGtggtttctgtttgtttataaGTGCTATCCTGATTGTCAGTTAGTGGGAGGCCCTTAGTCTTTGGCCATGAAGCTTTATTTTAGGAGTAATTATGTGaagttgaaaaaagaaaaaatatttggcaGCAAAATATGGACTATCCTGCGTCTACCAGCCCTTTAACAGTTAAACGAATGACTTTACTCTGGTCCATAACCCTCTGGTCATTGGCGGGTTGGAGGTTGACAGGATTTCCTCCGATGACCTTCTGAGATGGAGCTACGCCAAAACCAGCCACAGTCTTCTTCCCCGTGAAATACACAAGCAACCTCCTTCAGCAgatgactttgttttttttatggtaaaacGACTGAATCACACCAGCAAAGTAAAACAATGGAATACCTTCATTACTCTGGACCTTTTCCTGTAAACCCGACATTTATCCTCCCACCCACATCCCATCACAGAGGGAAGCAGAGCCcctctgaataaaatcattggCGCCCCAGTAGTTTGGACAGAAAGCCTGAAGAGGGTTTGCTAGGTTTAGACGCTTCTGCACGGCCCGAGCGATCCAGCCCCAGCTCGCCTTCCAGCTGTTCCAGCTCTGATTGGTCTAACAACTCAAAGTCCTCCGCCTCACTGTCCGATTCCTCTGCCAGGGCCTGGACCAGCGCAGGCGCTACAGCTGCCTCCAGGCGTTCCTGCATGGCTGCGGTTACTGCTGCTGTGATTACGTCTCCAGCCAGCCTCTGCACAACCTCCAAGGCCTGGGCCACGGGTTCCTCCTCTGACTGTGTGGAGCCGACCCTGCTGGGGTGGGCTGGAGGGGTGGGCATCCCAATGCTCAGGTCTTCATCGTCATCTCCATTTGTTCCTAAGCCATTGTCTAAAGAAGGAAACTCTGGTAGTCCGCCGGTGAAGACTTCCTCGTCACTTCGCCGGTCTGAGTCTTTGTCTTCAGAGTTTTCTGTCTGAGGTGTGTGTCCCTCTGAAAGGTTAAAGGTGCCATTGTCTGTCCATGTTATTTCAGAGACCTCTGTGTCAGATATAGACAGCTCTTTGCAAACGATGGAGTCCATCTTTGGGAAAAAGTGCAGACAGATCTGCTTCAATGCTCTCTCTCTTGGCTTGTGACTGGAGTATTCTTTTCTCTTCATGATTCTCCTTTATTTTCTGAAGAAACTCGCCCACTCCAAAGTCCAGTTTCTGCAGAACTGGTTCCAACCACATCCCAAACTCATGTGACGACACCAAAGGCCAGAGAAAAATGCCTAGCACTGCAGTAAACAGATGTAGAAACTATTAATGTGTGTGTCACTCTTACCAGTATGTTTATGAACCTGCTGACTGCtaggaagaaaaagaaaccaGAGACTAAGTGGGAATATCGTCATGGTTACATTGCTAGGAATCCACTATCACATGACAAACAGTTAGATGTTCTCGAGTGTGCTGGAGGAAAATCTAGGAAAGGCTATGCTCGCCTTAGTCAATAGTAGCATGCTTACAATCATTGTACAAAGACTTCAGTGAAAAGATATGACAATAACTATTAAtttgatactttttttgtgtAGGAAAATGTTGGCACTTACCTAAGATGTATGAAATAACAACCCCTGGAATGTAACGTCCAAGTATTGCCAGAAAAGTACACATACTGCAGACCAGCAGACAGAACTGCaatgaaaaacacttttaaaatgtctcAGTTCACTTTAAAAGTTGACATAAAATActtcatgaaagaaaaaaaaaaaaattaaatattttttttaacatacatCACTATGTGATGCACCTGGAAATATCATCAATGATTATATAAATTAGTATTAGGACCACTGTCAGACCATGAAAAATTAACTAGAAAAAGCACAGTAATGGTTCAAATGGTAAAAACGTAGACAAAATTAAGACTTAGAATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17912 lncRNA upstream 73510 14749217 ~ 14749651 (+) False plxdc2a
TU17661 lncRNA upstream 185356 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 186392 14636444 ~ 14636769 (+) True G11917
TU17656 lncRNA upstream 219616 14559860 ~ 14603545 (+) True G11914
XR_006252197.1 lncRNA upstream 325288 14495450 ~ 14497873 (+) True LOC122355240
TU17945 lncRNA downstream 106 14827051 ~ 14829486 (+) True G12136
TU17957 lncRNA downstream 30427 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 39253 14866198 ~ 14878772 (+) False G12144
TU17962 lncRNA downstream 39253 14866198 ~ 14869731 (+) True G12144
XR_006246966.1 lncRNA downstream 112244 14939189 ~ 14982818 (+) False LOC122323195
XM_043256726.1 mRNA upstream 44326 14776322 ~ 14778835 (+) True ackr4a
XM_043256760.1 mRNA upstream 47665 14773824 ~ 14775496 (+) False si:ch211-106h4.12
XM_043256751.1 mRNA upstream 47665 14773825 ~ 14775496 (+) True si:ch211-106h4.12
XM_043256772.1 mRNA upstream 70000 14746107 ~ 14753161 (+) True plxdc2a
XM_043256644.1 mRNA upstream 77203 14726160 ~ 14745958 (+) True si:ch211-106h4.4
XM_043253296.1 mRNA downstream 9214 14836159 ~ 14836952 (+) True rnf182
XM_043261352.1 mRNA downstream 11477 14838422 ~ 14849429 (+) True ranbp9
XM_043261364.1 mRNA downstream 25755 14852700 ~ 14855171 (+) True epdr1
XM_043261298.1 mRNA downstream 28884 14855829 ~ 14863508 (+) True stard3nl
XM_043217860.1 mRNA downstream 83930 14910875 ~ 14915309 (+) False otulinb
XR_006252462.1 other upstream 40184 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 40457 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 643546 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 643546 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1950016 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1440098 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2205374 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2535300 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2739896 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2780307 17607252 ~ 17608092 (+) True G13111

Expression Profile