RNA id: TU18166


Basic Information

Item Value
RNA id TU18166
length 2027
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G12255
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15118457 ~ 15180254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAAGATCAcattctttctttattattttttcggTTGGTTTATAGGCTTGGTGTTTTTACCTGAGGTGTTCCTCCTGACAGCATAAAACTCATGGCTGCTTTGAACAGCTTCTCAGCCTGCGACAGTAAACAACAAAGAGAGTCACATGCCGTCGTTCGGTACAGATGTAAGCGCTAATGTAGAGTACTGAGTTAGTGGAGTAGGGCAGAGGGAAGATCACCCTCAGCCTTACTCACATTATCCAGCTGACCTTGGACAAATGCAAGATTCGCCATCTGTGAAGCAAGACAAACATTAAGCTACATTATGCTCTCATTTAGCACTAGTATTACATAGTAATATAGTATTGAGGGttgcaatgttttgtttaacaTGGAGAATAAAACGGACTGGgcaaggtgaaaaaaaacaacaacaacagcatacCAGGCTGTATGTGTATATGATGGCATCGTTATTGTGCATCTGATGCGCCAGTCGAACAGCTTTGTGTAAGAAGCCGTTGGCTGCATCCAGTTCCCCAATCATCATGCTGTACTGTGAAGGATGATGGAAAACATTTAGTCTTCAAcaattacatttccaaaaaatcttaatattaaaaGACTGCACTGCATAACTTTTGCCCACATTTAAAATCTGGAAAACTCAATGCTAGTTTCTGAAAGTCAGAGCCGGTCTGATTTTCACAGAAATCgtgtagtttctttttttatcttcagACTTTGAGTCTATCCAGTTGAAGGACATCAGAAATGTCTGATATTTTTAGCTGGGTTTATAGGAtatattgttttcatgtttctGCGTGACTGGTAGTGTGTGATCCTAAGTCATTTAATGtataatgccttttttttttttttttttttttttttTGCTTTCAGATATGCTTTAATCACTGcctcaaaccaaaccaaaccaatcACTCATAATCCTCACAACAAAACGATCACAACAGTTTATATAGCACAGGTGCCAAGATGGCATAACTCTAGTTACTCTacaaagcaaattattattatttcagcttGTTAATCAAATTGCTTAAGTTGTGAGTTatgttttttcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacacacacacacacacacacacacacacacacacacacatatatattcaaGCAGATGTCTAGCCAACGCAGTTGCAAATGTTCTTGATCCTTTTTACGTCTCAGACGCATCCAGAACAACCAATTTCTTGCtggtttttttctcttttttggtACAATACATGCGAAGCTCCAGGAATGTGACCGTTCACTAACGGGGGATTCTGACATTCATTCAATCTTATTTTTATCTGCAATGAGAAGAATAAGAACCTTTTAGTGCAGGAATATCTCTAGGATGGATcatgatggtgttttttgtcCCCACGGACTACTGTAGTAATCTGTGATTTACCTCTTCTTTTTGTCTGAGAAGTAAACATGGTTTCATGCTTCCATTACAATGAATACAGGAGACCTGGGGCTAAGAAAAATACCACAGAAATGTGTGAAACTGTAAAGTTTTAATACAGTGACTTCAGCAGGCACTATTATTCTCTGATATTAAATACTTACTGCCTTATTGTGGATTTTACATTCTTCCCGATGGACACTTGGTGTTTTTTTTTTGGCACATAAGGTGGGTCTGAGGATCACATTCACTACACTCTTCGTCTGTCATAAAGAGGAAAGACACAGGTACTGTTTTCTCAATGGTGTAAAAGTCAAGGTGTTTGTCTTTTCCGTAATCCTCATTGGCTTTTTTTATCGCCTCGTCAACAATGCCTCTCTCAAGTTCGTTTAAATCCTCATATTTCTGTCCCTTTGTGAGCTCCAGCAGGAACAGAACACTAAACAAGAACAGCATGCCTCTCATCTTGACCAGCGACTGAAGAGCTGTGCTGTTTTCTGATCTGTTTTAGAATCAGTTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18080 lncRNA upstream 81451 15034929 ~ 15037006 (+) True G12211
XR_006247778.1 lncRNA upstream 91668 15025403 ~ 15026789 (+) True LOC122328201
TU18066 lncRNA upstream 135755 14939253 ~ 14982702 (+) False LOC122323195
TU18068 lncRNA upstream 135755 14978707 ~ 14982702 (+) True LOC122323195
TU18065 lncRNA upstream 139951 14939253 ~ 14978506 (+) False LOC122323195
TU18267 lncRNA downstream 65058 15245312 ~ 15249249 (+) True LOC122357435
TU18270 lncRNA downstream 72240 15252494 ~ 15253044 (+) True G12321
XR_006252526.1 lncRNA downstream 318270 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 495949 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 542832 15723086 ~ 15804921 (+) True G12432
XM_043220464.1 mRNA upstream 180499 14935722 ~ 14937958 (+) True mycb
XM_043217848.1 mRNA upstream 185777 14918221 ~ 14932680 (+) False ankhb
XM_043217840.1 mRNA upstream 185777 14918409 ~ 14932680 (+) True ankhb
XM_043217883.1 mRNA upstream 203148 14910919 ~ 14915309 (+) False otulinb
XM_043222099.1 mRNA downstream 34615 15214869 ~ 15222679 (+) True klhl18
XM_043217246.1 mRNA downstream 49752 15230006 ~ 15234855 (+) False zgc:136930
XM_043217249.1 mRNA downstream 49762 15230016 ~ 15235251 (+) True zgc:136930
XM_043217271.1 mRNA downstream 58227 15238481 ~ 15240694 (+) True ccr9a
XM_043256825.1 mRNA downstream 61543 15241797 ~ 15246316 (+) False LOC122357435
XR_006252462.1 other upstream 335480 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 335753 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 938842 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 938842 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2245312 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1086789 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1852065 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2181991 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2386587 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2426998 17607252 ~ 17608092 (+) True G13111

Expression Profile