RNA id: TU18248


Basic Information

Item Value
RNA id TU18248
length 245
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G12308
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15223211 ~ 15223455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgcagtcatgCAACATTTTTAGAAGAGAAAGTCTAGAAtagtatacttaaaatatagataaaaaaaagatttccaacagaaactaaaacatattcatatttagGGTTATTCATTCAGCAGATTTCATTTCTCTGGTCTCGTTGGGTCACCAATGACAGAGAAGCACCCAGCACAGTAACGGGCCGGTTTCTTTGTGTTAGCAGAACTGGCTCTTTTCAGACGAAATCCAAGACTGCTGACCCCC

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18059 lncRNA downstream 288186 14934769 ~ 14935025 (-) True G12199
TU18026 lncRNA downstream 368042 14853694 ~ 14855169 (-) True G12175
TU18027 lncRNA downstream 369659 14852910 ~ 14853552 (-) True G12176
TU17991 lncRNA downstream 373778 14772490 ~ 14849433 (-) True G12159
TU18253 lncRNA upstream 14504 15237959 ~ 15240826 (-) True G12313
TU18255 lncRNA upstream 14504 15237959 ~ 15240826 (-) False G12313
XR_006252728.1 lncRNA upstream 323580 15547035 ~ 15553546 (-) False LOC122359617
XR_006252727.1 lncRNA upstream 323580 15547035 ~ 15553546 (-) True LOC122359617
TU18367 lncRNA upstream 328546 15552001 ~ 15553604 (-) False LOC122359617
XM_043217889.1 mRNA downstream 10013 15193555 ~ 15213198 (-) True nrbp2a
XM_043258830.1 mRNA downstream 30166 15180965 ~ 15193045 (-) False puf60a
XM_043258848.1 mRNA downstream 30166 15180965 ~ 15193045 (-) True puf60a
XM_043258858.1 mRNA downstream 30211 15180965 ~ 15193000 (-) False puf60a
XM_043258839.1 mRNA downstream 30212 15180965 ~ 15192999 (-) False puf60a
XM_043217260.1 mRNA upstream 501 15223956 ~ 15229668 (-) True bfsp2
XM_043256784.1 mRNA upstream 24630 15248085 ~ 15255907 (-) True prpf4ba
XM_043259972.1 mRNA upstream 340429 15563884 ~ 15579706 (-) False ccdc24
XM_043218396.1 mRNA upstream 362062 15585517 ~ 15674874 (-) True b4galt2
XM_043217212.1 mRNA upstream 452748 15676203 ~ 15682026 (-) True atp6v0b
XR_006247858.1 other downstream 34418 15188656 ~ 15188793 (-) True LOC122328939
TU18236 other downstream 71439 15147204 ~ 15151772 (-) False smarcd3a
XR_006247859.1 other downstream 92496 15130599 ~ 15130715 (-) True LOC122328941
XR_006247132.1 other downstream 95720 15122525 ~ 15127491 (-) False faim2a
unassigned_transcript_207 other downstream 348829 14873076 ~ 14874382 (-) True LOC122360578
TU18553 other upstream 1001324 16224779 ~ 16230221 (-) False pappa2
TU18714 other upstream 1448121 16671576 ~ 16673710 (-) True G12658
unassigned_transcript_208 other upstream 1576976 16800431 ~ 16801951 (-) True LOC122356638
TU18963 other upstream 1582806 16806261 ~ 16806738 (-) True G12839
TU18966 other upstream 1599170 16822625 ~ 16823073 (-) True G12841

Expression Profile