RNA id: TU18270


Basic Information

Item Value
RNA id TU18270
length 465
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G12321
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15252494 ~ 15253044 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGGCTCCTTTGGCCTAAATTACTGCAGCAATTCGGCTTGACATGAAGTCGATCAGTCTGCGGTGCTGCTGTCCTTTTTGTCTTAAGCCCAGAAAAGATGCTTCTGACGCTGTCTGTTGTTCAAGAGTGGCTTGACAGAAGGAATGCAACAGCTAAAACCCATGTCTTGCATACGTCTGTGCGTAGTCCCGACTCCAGCTGCAGTCCACTCTTTGCAAATCTCccccacatttttaaataggttttatCCCCCCCCccatttttttcttgaGAGACAAGACTATGCTTGGCTTTCACATTATCCTCAAACGTGTCCAGGTTCTCTTGCTCGTAGGCTTTGACATCAGCAGCCACGCGCTCAAGGATGTCATCGGGAGAAGGTGATCGGCTGTGAGTGCTACTCTGAGGACTGCCATGCTCTGAGAGTCCTGACATGTTACTGTCCTCATTAACTGGCTTATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18267 lncRNA upstream 3245 15245312 ~ 15249249 (+) True LOC122357435
TU18164 lncRNA upstream 72240 15118457 ~ 15180254 (+) False G12255
XR_006252526.1 lncRNA downstream 245480 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 423159 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 470042 15723086 ~ 15804921 (+) True G12432
TU18415 lncRNA downstream 478775 15731819 ~ 15741601 (+) False LOC122356092
XR_006252280.1 lncRNA downstream 478786 15731830 ~ 15742798 (+) True LOC122356092
XM_043256825.1 mRNA upstream 6178 15241797 ~ 15246316 (+) False LOC122357435
XM_043217271.1 mRNA upstream 11800 15238481 ~ 15240694 (+) True ccr9a
XM_043217249.1 mRNA upstream 17243 15230016 ~ 15235251 (+) True zgc:136930
XM_043217246.1 mRNA upstream 17639 15230006 ~ 15234855 (+) False zgc:136930
XM_043222099.1 mRNA upstream 29815 15214869 ~ 15222679 (+) True klhl18
XM_043256794.1 mRNA downstream 3000 15256044 ~ 15260435 (+) True si:dkey-154p10.3
XM_043256801.1 mRNA downstream 3977 15257021 ~ 15260435 (+) False si:dkey-154p10.3
XM_043256838.1 mRNA downstream 7531 15260575 ~ 15262914 (+) True LOC122357442
XM_043256812.1 mRNA downstream 8917 15261961 ~ 15266205 (+) True opn4.1
XM_043254484.1 mRNA downstream 14085 15267129 ~ 15269496 (+) True tmem53
XR_006252462.1 other upstream 469517 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 469790 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1072879 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1072879 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2379349 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1013999 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1779275 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2109201 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2313797 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2354208 17607252 ~ 17608092 (+) True G13111

Expression Profile