RNA id: TU18414



Basic Information


Item Value
RNA id TU18414
length 884
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G12432
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15723086 ~ 15804921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagcgagagggacGAACACAAAGAGAGAAGGCTGGAACAAGAGTCTAAACAGTCTGAGGAAAGGTACATGTCATCAGCCTCCCGAAACACCTGCAAAACTACTGCACCTTACAACAGCGTGCCGAGCGGCAGGCCGGGTGGTCCTGGACGTACAACCCCGTCTCCAGGGCCTGGGACGCTTTTAGCAGCCATAACCCAACACACTCAATCCCCTGAGGACAAGGATGCTGGGAACACAGAACCTTATAGAGAAAGCATTCGGCTAGAGTTTATGAGATGTCTATCACTCCTTTGTGGCCAACACACGCCAACAGCCAGTAGCAGTAAACAAGCTGGGAATAGAAAGAGTGAGAGTGAATGAGAGAAAGACACTGAGACGAcggagaaagagagtgtgtgtggagttgACTGTATTAGACCACCATAGTGGAACGGCTATAAAGTCTACTAAGAGTTGTCTAATCACTCAGCAGCTGTTTAAAGAGATTACAAGTGTACCACAGTGCAACGTGGGGTAATATATAAACTGCAAATGAACACTAATCTTGGCATGCGCCGATTGGGGCCAATATTGACATTTTTCCCATATATTCTATGCTACAGCCGACAATACAcgcttatattttaaattaaatgtatacacGTTTTACTCAAAAACCAGGCATCAAAAGGAAACTAGCagaagaaaatggaaaatatgtCCGGATGCTGACCAATTGTTatcttttttgctttgttttgattaGGCCAAAGAAATAGACGAATCCAACTCTGACAGCATATAGCAGTTTGTAGTGTATTTCATACGTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18398 lncRNA upstream 44640 15676203 ~ 15678446 (+) True G12419
XR_006252526.1 lncRNA upstream 222772 15498524 ~ 15500314 (+) True LOC122357737
TU18270 lncRNA upstream 470042 15252494 ~ 15253044 (+) True G12321
TU18267 lncRNA upstream 473837 15245312 ~ 15249249 (+) True LOC122357435
TU18161 lncRNA upstream 542832 15178099 ~ 15180254 (+) False G12255
TU18436 lncRNA downstream 5972 15810893 ~ 15811393 (+) True G12451
TU18465 lncRNA downstream 70263 15875184 ~ 15875750 (+) False dars2
TU18466 lncRNA downstream 70263 15875184 ~ 15875708 (+) False dars2
TU18481 lncRNA downstream 73213 15878134 ~ 15878404 (+) True G12491
XR_006252739.1 lncRNA downstream 227836 16032757 ~ 16034626 (+) False LOC122359940
XM_043254165.1 mRNA upstream 17515 15694208 ~ 15705571 (+) True kiss1ra
XM_043218409.1 mRNA upstream 137913 15580143 ~ 15585173 (+) True zgc:113531
XM_043259962.1 mRNA upstream 158756 15521579 ~ 15564330 (+) False slc6a9
XM_043217539.1 mRNA downstream 44163 15849084 ~ 15856755 (+) True klhl20
XM_043217526.1 mRNA downstream 55258 15860179 ~ 15875764 (+) True dars2
XM_043260157.1 mRNA downstream 227062 16031983 ~ 16224471 (+) False astn1
XM_043260150.1 mRNA downstream 227063 16031984 ~ 16224471 (+) True astn1
XM_043260163.1 mRNA downstream 227063 16031984 ~ 16224471 (+) False astn1
XR_006252462.1 other upstream 940109 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 940382 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1543471 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1543471 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2849941 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 462122 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1227398 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1557324 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1761920 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1802331 17607252 ~ 17608092 (+) True G13111

Expression Profile