RNA id: TU18505


Basic Information

Item Value
RNA id TU18505
length 1144
lncRNA type intronic
GC content 0.37
exon number 3
gene id LOC122359940
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16032757 ~ 16034908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgcactgtaaaaagtgCTACACCCACAAAGTaggttttaaatactttaaatagttttaatctagtttattttatttgttttatactaaaACGTATTAATATACTTCctctttacttaaaatatatcagtttttatataacaatatattttaagtaaagctattgcaatttatttggGTAGTTATTTGTATATGGTTGTTGTGTACaagaaatgttataaaagtGAGTTGACATACACAATTTATTAGAGCAGTTGTCGGTGTGACAGGTTTGTTCATCaaacgtaaatattttaaaatttttagtaGTTGGCATTATCCATTTTTCACTGGCGGGGACTTGCCCAGGCAGATGCCGCATCTTCGACACTTCAACTGTTTGAACGCTGCAGCGGATCTTTTCAGGGACTGATTAACACGATACCCAAGCACTTTTGTTACCTGAGGGTCTTCAAGCTTCATATTCAGAGTCATGATGAAAGCGAGGTGCAGGCTGAGCTTGGCAGTTGCCCACTGAAAATTTACATGTGCCATCATCCCGACACAATTGGAATTATCATAGAAGGAAAGCCCGTGGTCAGAGGTGTGCCAAACCTGTCGAAAGCATGCTGCCTCTTGTTTGGACTTACATATGCCCTCGACCTCAAGTATCCCCCAAAGTTGGTGTACACATTCGAGATATATCAGAGGCTGTTTGTGGGATTGGACCCCATGCGTCCTAAGCCATCATCCAAGTATACCAATCTCCTCATTAAGTTATCTTAGATGTTTTCTCAATGACATCTGACATTGTTTGCCATCATTTTACAAGTCTCTGAATTTTACaagtattttgatttaaaatacaaaaatcttacagattttctttttcgtttgtttttgaCAATACAATGTGATGTTATGGCTCACAGTTACATTTATCTAAACATTGCAGATTGGGCAGTTTGGCTATTTCACTTAACTGTTCAGAACAGGTTGAAATTACACTTacacaatgtttgttttatattattgtgtacATGTGCAGCCACATTAATGGCCTGTTTTGTAGTCACTGTTAAATGTGACACTGGTTGACACTGAATAAATGTTGTCTTCAGTCTATCctatctttttcttcttcaattgattttgtaattgttattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18481 lncRNA upstream 154368 15878134 ~ 15878404 (+) True G12491
TU18465 lncRNA upstream 157022 15875184 ~ 15875750 (+) False dars2
TU18466 lncRNA upstream 157064 15875184 ~ 15875708 (+) False dars2
TU18436 lncRNA upstream 221379 15810893 ~ 15811393 (+) True G12451
XR_006252280.1 lncRNA upstream 289974 15731830 ~ 15742798 (+) True LOC122356092
TU18524 lncRNA downstream 228866 16263774 ~ 16264920 (+) True G12530
TU18588 lncRNA downstream 415245 16450153 ~ 16456532 (+) False LOC122323293
TU18628 lncRNA downstream 656018 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 696829 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 698313 16733221 ~ 16776351 (+) False LOC122361622
XM_043217526.1 mRNA upstream 157008 15860179 ~ 15875764 (+) True dars2
XM_043217539.1 mRNA upstream 176017 15849084 ~ 15856755 (+) True klhl20
XM_043254489.1 mRNA upstream 271018 15754575 ~ 15761754 (+) True kif2c
XM_043254490.1 mRNA upstream 271018 15754575 ~ 15761754 (+) False kif2c
XM_043254165.1 mRNA upstream 327201 15694208 ~ 15705571 (+) True kiss1ra
XM_043220484.1 mRNA downstream 240162 16275070 ~ 16285558 (+) True cop1
XM_043223811.1 mRNA downstream 290242 16325150 ~ 16443361 (+) True tnr
XM_043217026.1 mRNA downstream 415224 16450132 ~ 16455213 (+) False LOC122323293
XM_043217035.1 mRNA downstream 415458 16450366 ~ 16455213 (+) True LOC122323293
XM_043217636.1 mRNA downstream 461033 16495941 ~ 16497221 (+) True mrps14
XR_006252462.1 other upstream 1249795 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1250068 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1853157 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1853157 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 3159627 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 232135 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 997411 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1327337 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1531933 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1572344 17607252 ~ 17608092 (+) True G13111

Expression Profile