RNA id: XM_043217026.1


Basic Information

Item Value
RNA id XM_043217026.1
length 1999
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122323293
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16450132 ~ 16456532 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGTGTGTCAGGCAAAAGAGTTGCGAGCAGACAGAGGGCTCTTTCTTATACTGTACGGCCCAGGAAGACTGAGAAACAGTGACTCGActcctcctctcacacacagactccaGGTACAGCAGTGGATATGCGCAGTCCAGATTGTGTTGCTGAAACGAGGGTTATGTGATGCCCGCAGAGACGTCTGGACTGACCCCTCATCAGAGCCGAAATGCCCTCATTCCATCACATCTGTGAGAGTCAAGGCAGAAGAGACTAAAATAGAGTTGGAGTCTCCAGAGGGACCGATGCTGAGAGGAATCCACCCAGTATAAACACGACCCACGAGCTCTCCAATTCTCACAGCCACAAGATATGAATCGTGAAAAGTCAAAGAGAAACATCTCATAAGCATTGCTTTGTTCTTAAACCCCAAAGGCAAGGCGTTTTATGAGATAAACTGTGTAGTTTTAAATTTGAAGCAATAACTGTGTGCATCAAGGATTTCGAAATTGTCCATCCACCATTTATTACAATTGGCTTGTGTGATATTTCCTCAGGATGGGATTTGCTATGACATAAGAACATTTAGCAGGCCTTAGCAGGTGTTGGATCTGGATCAAATGGACAATTTCTTGATCTCTAGATAGAAATCCCATGCTAATTACTGGTTTAATCGGATCTACGGTGGATTTGCATCTCAGATCGCATTGGATTTGATCTCTATAGGAACTCCGAAGGGATTCTGAAGAACTCTCGCTGAACCATGAAGGAGGAAATCCTGCAGTTTTTCAATGATATATGGAACCTCGCTTCATCCAAGCACGACCAGAGCGTTTACAACACGGTGTGCCTGGTAGTGCTTCTGACTCTACCGCTGGTTGTCCTCTTCACATCTCTGCTGGTCTGCTGTCATTGTTGCTGCTGTCGTAATGTTGACGGATGCCGGTGTTGTTGTCGTAAAGGGGAGACCTCGGTCACAAATAcgaaaacagaaaagaagaaaaagaaaaacggcAGCCAGAATAATGAAGACTTGTGGATCTCCGTCCAAACAGATCCTATGATTAATGAAAGACTTGCACTGACTATGGTGTGATCAATTTTAGGTGTATTTATCTTCATGGTACGTCTAAAGGTACAGAAGCGTTATGGCAGCGTTTGCTAAAATGTGCCTGAAtgtaaaaaattctaaatagaattttaaatgaatttttgtataaaagtaAAGTTTAGGAGTGAACGAATGTCGTGTGTGATCCTGAAAGGCTTTCCAATAACCAACGTtagttaaaaagaaatgcttatctttaacatttaaaaaaaaaaaacattctgtctAAATGGCCACTAAGGCCACCTTTACACTGCAGGCATTAATACCCGATATCCAGTTTTTGACTATATTTTTCTCAATGACCCATATCAGATATCTGCACTCTCTCCATACACTTGGCAATATAGCCCAAGGTAGATGTACTGACCTGGAAAAATTAGATGAAAAAGTAAGTAAAGATGGCATGTTTTGCAATGGAGGCAGATGAAACGGTAATACAAGCTTTTGAAAAGGGTAGAATTTCCTTTTGCTAGAATTGAAATCGTTTAATCACAATTGGTGTCCACCTGAGCTGTCATTTACCACcgttatattttaaagtgcatatGACTGACATCGATGGGAATATCTGATCTGATCACTTACATGGCAGACTCAAGTGAACATATCCAGCTCGTAACAGCTTCATTTCCATATATGAATGAGGCCTGAAACTGATCTGAGAATATCAGAAGTGGAGTGCTTTTTCCATGTTTACATGTTTGTGGGTCATATCTGATCTGTGCTACAttggagaaaaaaactgaattgggTCACTTGAACTATGTAGTCGTGCAAATGCAGCCTAACCAACAGTGAATAGCCGCAGAGCAACTTTTCTGTGTTAGTAGTACTGCACtttactgaatgtgtgtgagtgaaataCAAAGATTTATTCAGGAATTAAACTAGCTACCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18524 lncRNA upstream 185212 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 415224 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 415506 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 571728 15878134 ~ 15878404 (+) True G12491
TU18466 lncRNA upstream 574424 15875184 ~ 15875708 (+) False dars2
TU18628 lncRNA downstream 235713 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 276524 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 278008 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 279592 16734805 ~ 16776351 (+) False LOC122361622
TU18737 lncRNA downstream 281161 16736374 ~ 16776351 (+) False LOC122361622
XM_043223811.1 mRNA upstream 6771 16325150 ~ 16443361 (+) True tnr
XM_043220484.1 mRNA upstream 164574 16275070 ~ 16285558 (+) True cop1
XM_043260157.1 mRNA upstream 225661 16031983 ~ 16224471 (+) False astn1
XM_043217636.1 mRNA downstream 40728 16495941 ~ 16497221 (+) True mrps14
XM_043253919.1 mRNA downstream 42496 16497709 ~ 16499702 (+) True LOC122355504
XM_043263630.1 mRNA downstream 45839 16501052 ~ 16507898 (+) True plk3
XM_043220290.1 mRNA downstream 90123 16545336 ~ 16547012 (+) True ankrd45
XM_043259164.1 mRNA downstream 106171 16561384 ~ 16612466 (+) True rasal2
TU18526 other upstream 181335 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1667155 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1667428 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2270517 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 577106 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 907032 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1111628 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1152039 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1324126 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile