RNA id: XM_043263646.1


Basic Information

Item Value
RNA id XM_043263646.1
length 1855
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC122362257
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16483160 ~ 16512019 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGACCACTTAGTGACAACATTAGttgagaagagaagagagaacaTCGGTGGAATACAAGAagattcaaatttaaaattggGCTTTATAAAAGGAGCGGTAAACTGTGGTGAATGTTTTGGCACGTAGATGAATATCTGACTAGAGTGATGTGGAGGCAAAGACTGGGGAAAGACAGAAGAGAGGTGAACTGAACCTGAGATGTGGTATAATCTACTGTTGACTCAATCTGTGGACTTTAACAAAAACTTACGGCACAGACAGATTTCTTCATCATGGCCAATCAGCCTCTACCACTGTCTCAGGAGACATTAGCTCAGTTCAATCGCTCCATGTCCAGAGAAGCAGGTCTCTCAGGGCCTCCAAGGCGACGTTTGGGCTCCATCTCCACTCGCCGAAGCTCCAAAGACCAATCCAAGGACCAACCCCACCACAGACCTCTGTTTCTCAGGAGCATGACGGTTCCTTCGTCCGACTCATCGTTCCTGAGCCCCAACGTCAGCAATTCTCACATCTCCATGGGCAAACGGTTCTCATTCGCAGGCTGGCACCAGGGAGGAAGAGTGAGCTTCTCCGGACTCTATCTTCAACAACCCATCCAGGAGGTGTATGTGGAGAACACCTACAGAATGGGACCAGAACCAGGGTGCCACTTCAGTGCCAGCAGGACCCAGCAGATCTTACAGGTCACTCTGGATAGTTATTTGGACGGTGTGTGTTACAGTCCGGATAGTTGTAGCCAGCTGTGTCAGATGTTAGCGGATCTAGTTCTCAGTAAGCTAAAAGATGTAAATCCGCCACGATATAAACTCGTGTGCCAGGTGGTGGTCGGGCAGAGTGATAAACAAGGTATAAAGGTGGCCAGCCGTAGCCTGATGAACCCCAACACTGACAACTACACATCTGCTGTTTACCATAATCACTCACTGTTTGCTGTGGCTTTAGTACACGGCATGTACTTTGAATGAAGGCTAAATCAACAGAGCTAAATATCAGTTTACTAAATGCATACTTTAAgtctctttaaaaatatctttacatttttaaagaaaggtcgcataatttaaaataacatttttctattttaaaaagcaaagttGATTTTCTAGTAAACATAAATTTAGAACgtatatacaaattattttatatccattcttgtatattatgtattttgattttatgcTAAGACGCaagcaataacattttatgttctgtcttttcttatgttatgtaaaaacagctacacacacacagtttgtttgcaaaaaaacattttaattttttcagaaGTTGTTCTTTAATATACGCAATTGTTTaatttcttgtatttttattttgcacctAACCCAGTTGCAGtttaattgagattaattagaatgtgcaattacattttttttttcttcaaaacggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggagttaTAAATTTTTGCAAATTTATATTACACAGAGACACAATGTTACAGGGATGTAATTCTTTTCCCTCAATGTGCCAATGTTTTCCTCAATGTGTCATTAAAAATTGCCAGGAAAAGAagccataaaaataataataataataataattttaaattataaatactacTAATTATAAatgctactaataataataataaaccgaACTGTtacttaaaattgtaattaaaaatgtttgtctttaaaatcttaaaaaaaaaaaaaaaaagaaaatgtatattttcaataAACTTTATTCCCCCCCACTCTCCCAATACATAAAAAGTGATCATACTGAACATTTCCCAGTGTTGACACCGTACAATTATgttacatcaataaataaaaaactataaataaaaaaataaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18642 lncRNA downstream 3710 16503042 ~ 16504056 (-) True G12614
TU18644 lncRNA downstream 3710 16503042 ~ 16504056 (-) False G12614
TU18649 lncRNA downstream 9349 16497703 ~ 16498417 (-) True G12619
TU18589 lncRNA downstream 62542 16444963 ~ 16445224 (-) True G12585
TU18568 lncRNA downstream 208022 16299172 ~ 16299744 (-) True G12567
TU18650 lncRNA upstream 30475 16542483 ~ 16542771 (-) True G12620
TU18769 lncRNA upstream 210688 16722696 ~ 16723505 (-) True G12682
TU18768 lncRNA upstream 211126 16723134 ~ 16723505 (-) False G12682
TU18797 lncRNA upstream 271136 16783144 ~ 16784555 (-) True G12708
TU18951 lncRNA upstream 277247 16789255 ~ 16789724 (-) True G12830
XM_043255848.1 mRNA downstream 22562 16457757 ~ 16485204 (-) True tnn
XM_043255857.1 mRNA downstream 22562 16457762 ~ 16485204 (-) False tnn
XM_043260136.1 mRNA downstream 238931 16224723 ~ 16268835 (-) True pappa2
XM_043220780.1 mRNA downstream 483116 15948412 ~ 16024650 (-) True brinp2
XM_043217552.1 mRNA downstream 647675 15856239 ~ 15860091 (-) True cenpl
XM_043218743.1 mRNA upstream 176617 16688625 ~ 16698623 (-) True nmnat2
XM_043222350.1 mRNA upstream 409662 16921670 ~ 16924976 (-) True LOC122327154
XM_043220698.1 mRNA upstream 503215 17015223 ~ 17019650 (-) False ccnl1b
XM_043220691.1 mRNA upstream 503215 17015223 ~ 17019650 (-) True ccnl1b
XM_043220705.1 mRNA upstream 505105 17017113 ~ 17019654 (-) False ccnl1b
TU18553 other downstream 277545 16224779 ~ 16230221 (-) False pappa2
XR_006247858.1 other downstream 1318973 15188656 ~ 15188793 (-) True LOC122328939
TU18236 other downstream 1355994 15147204 ~ 15151772 (-) False smarcd3a
XR_006247859.1 other downstream 1377051 15130599 ~ 15130715 (-) True LOC122328941
XR_006247132.1 other downstream 1380275 15122525 ~ 15127491 (-) False faim2a
TU18714 other upstream 159568 16671576 ~ 16673710 (-) True G12658
unassigned_transcript_208 other upstream 288423 16800431 ~ 16801951 (-) True LOC122356638
TU18963 other upstream 294253 16806261 ~ 16806738 (-) True G12839
TU18966 other upstream 310617 16822625 ~ 16823073 (-) True G12841
unassigned_transcript_209 other upstream 311250 16823258 ~ 16824802 (-) True LOC122356623

Expression Profile