RNA id: TU18739


Basic Information

Item Value
RNA id TU18739
length 1420
lncRNA type sense_over
GC content 0.56
exon number 5
gene id LOC122361622
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16724614 ~ 16776351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatatagaaataaatactcTTCGATCCctaagatataataaaatatgatataaataataataataaaaatgtttacagtttaTCACAATCCACATCATCATACATATTTTAGCCCCAATTCCTGCTCCCATTTTTGTTATGACTGTTAGTGTTGTGTGAATACTGGTGGAGGGAGAAAGATCATTTTTGGCCAAGGAACATCTTTAATAGTTCAATCAAGTAAGAATCTTTacgtttttttacataaattaaaaagatggGATTTAATACCAtgatttatgaacaaaaataaaaaaatactgtcttTGAAATATTGATGTTGAAACAgcataaactttatttataaaacattatttattcctaatattatatttatttctcaaaagGCCATCAAGATGTAATCAAGTCTTTAATAATATACACATGCGGtaattgtactgtaaataaatatttaatgataatgatattGCAATTGAAGGAGCTGTTTGGTGTAATTAGCCAAATCGTAATGAAGGTAGTTTTTGTGTCTACTCTTCATATTGTGTGACTACTGGTGTATACAAGATCATCTTTGGAGAAGGGACAGTGTTACATGTAGAAACAAatgaaaaaaaagagccaAGCTATTTCAAAATTGAAGACTCGTGCCTGGCAACCGACTTCACCGACCATAGAGCTGTaaattttgagaataaaaacattacaccggTGCGATATAAAGACCAGAGTTACTACAGCAGCTTCGCCTTTCATGCTGGAGACGAATGTAAAGATAAAGTAAGCTGTGAAACATCATCAGCCGATGGCGGTTTCGAATCAGATGAAAAAATCAACTACCTGTCACTGGGCCTCTACTGGCTGAGAATCCTCTTCATGAAGACTGTTGTGTTCAACATCCTGATAACTTTCAAAGCATGGATGAGCTAACgtgtcGGGATGAAAATCCTTTTTACTCCGTTGGGTTCATCAGTGGCTTCAACGAAGACAAAACATCACATTCGAGAGCCATCACAGCTGCAATTTAGTTGTTAAATGATGATCGAGGGATTATGAAAGACTTATTTCTAatacttattacttatttttaagaCTTATTTCCTATATACACATCTGAATGTCATTCGCTTATGCTTTTATAATATTGGCTTAACTATTGTGGTTTAGGATACAGTAGAAGTAAAACACCAGTAATTGTTTCTAATTTAGACGTAGCTCATGTTTCATTGCTCTGCATTTGAATGATTCctacatattatgtaaaaaaactattcatttaatagaTAGAATTGAATTGCCTGTATAGCTTTTGTATTCTGCATCTTATTTGCTTTCACAGTTTCTGACCGTATCGGGTGTCATTTTAGCAGTGACtgtataatgcaaaaataagaaaaataaaatcatcaaataatcaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18628 lncRNA upstream 61431 16690926 ~ 16693619 (+) True G12607
TU18588 lncRNA upstream 298518 16450153 ~ 16456532 (+) False LOC122323293
TU18524 lncRNA upstream 490130 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 720142 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 720424 16032757 ~ 16034626 (+) False LOC122359940
TU18751 lncRNA downstream 7549 16783900 ~ 16784544 (+) True G12669
TU18819 lncRNA downstream 50679 16827030 ~ 16829326 (+) True G12729
XR_006252365.1 lncRNA downstream 53757 16830108 ~ 16834314 (+) False LOC122356672
TU18820 lncRNA downstream 54298 16830649 ~ 16831883 (+) True G12730
TU18821 lncRNA downstream 56709 16833060 ~ 16839463 (+) True LOC122356672
XM_043262423.1 mRNA upstream 31492 16722128 ~ 16723558 (+) True LOC122361612
XM_043258692.1 mRNA upstream 36948 16701077 ~ 16718102 (+) True smg7
XM_043258700.1 mRNA upstream 36948 16701077 ~ 16718102 (+) False smg7
XM_043258710.1 mRNA upstream 36948 16701078 ~ 16718102 (+) False smg7
XM_043218730.1 mRNA upstream 65678 16677139 ~ 16689372 (+) True lamc2
XM_043255548.1 mRNA downstream 67370 16843721 ~ 16847555 (+) True LOC122356618
XM_043220730.1 mRNA downstream 218338 16994689 ~ 16996615 (+) True ing5b
XM_043220723.1 mRNA downstream 218342 16994693 ~ 16996615 (+) False ing5b
XM_043220682.1 mRNA downstream 220738 16997089 ~ 17009227 (+) True pak2a
XM_043220670.1 mRNA downstream 233215 17009566 ~ 17014352 (+) True klhl6
TU18526 other upstream 486253 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1972073 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1972346 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2575435 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 255968 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 585894 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 790490 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 830901 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1002988 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile