RNA id: TU18800


Basic Information

Item Value
RNA id TU18800
length 2861
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G12711
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16839571 ~ 16842431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCAAGGCTTAACATCCAAATACCTATGTACAGCAACATAGTGAGACTATGCAGAGCAAATAACACTGAAGTCTCATCTGGAAGCTCCTCCTCTTATCTCAGTATGGAGTTTTCTTTGCAGTAATGTAGCCAGCCAATCACATAGTACAGGAACTTGCTACTGTCGGGCATATGGCAATACCTATTCACGTTTTCGAGACGTACTGCTGCTGCAGAAATAGCATATAAAATAACCTGTAGCAGAGTTATACATGtcgagctggggaaggtggaggttTTCAGGGAAACTGTGAAAGTGCACTGCAAAAGTCTAAGGTGAATGCCAGAGAGCCATATAAATGCAAAGATGTGAGCTCATTGGCTGCATATGCAGCATGAACCAATCAGCTTGCCAAAGCATTTAACTCTGAATATCGGCagttgcattaattaattattgccTATTTACATAGTTCTCATTTAGGCTACATGCTGCTGTTTATGTGCTGCAGGTGTTACCATATCCTGCACTTTGACTCTGACTTTTTGGTTTATGAAGACACAAATGTGGTTTGATATTTATTCGATAACTCACAGTTCAAAACCAGTTTTCTGAGTGAGTTTTTGTAAAGCCTCTCAGGCACTTTGTATCACTGGGCTCCTACTCTCAGAGCACAGTAATAGAGAGCTGAATCTGACAGAGTTACACTCTTAATGGTCAGTGAAGTGGATTTCTGGGATGTAGTTGATGTAAATTGTTGGGGGTTCGGTATGTTCTCACGTGTCTCTGATCGTCCACCTTTTAGCAGTATATATTGAGGCTCTGTGTTTGGAAACTCTCTGTACCAGTAAAGGAGAACATAGCTGCTGCTTGTGTCATATGAACACTCCAGTGTTACAGAATCTCCTTCTGTGCTGGTAACACTGGTCTTCTGGTCACTTGGGCCAATCCAGTCTTGACCGATTACACCTAAGAGGAAGGCACAACTTCACTATTAAGATttgtacattatacatttaaagttCTGAATAAtcatacaaatgtattataattgtgTGTTGTACCTGATGAGGTGAGAATGAACAGCAGTAGATATTTTTCCAGTTGATGACTGAGTGTTTCCATGACCGCATCGGAAAAGTCTTAACGTGTTTCTTGAGAGCTTGATGTTTAAATATCACGGGGTGAATGATGAAACAGGAAGTACTGCTTGTCACACAACATCTGCATTGCTCAGAGGTCGCAAAAggatcaaatattttaaattagttttctgTTCCTTAGGCTTCCAGCAGATGGCGATGAAATATCACAGTTCTTTACTTCAGCTGagtataatttcatatatttacttCTGTACATGAAAGCTTTATATCTTGTCAGGGTACTGTATATAATTACTAAAGCCTTTAGTAAATTATGAATCGATATAATTGCAATAGTGTTCTAATTGTTAACTTTGCTTTCATAAATTAgataaaattgcattatttatttgtttatgtaatgGCTGATTGGAAAATATGTAGATAAAATCTGTATGATCTATACTAGATTCAACTACAGTATTGCTGTGTGTCAGGTTTTTGTACAGAGATCTTGTGTTTCCTGTCACTGTGGGCACCATGGCACAGTAATACAGAGCAGAGTCTTTCAGTTTAGCAGAGGAGATCTCCAGAATCACGTGGGTTTTCTCTTCATTCACTTTCCCAAAGAAACGAGGATCTCGATCCACAATTTCAGACCTTTGCGAAACTTTTcctgaaatatgtaatatatccAAAAGAAACTCAGGATCTGATCCGGGATATTGTCGATACCACTGCAGTGTGGATGCTGAGGAGTAGCTACAGGACAGAGTAAcattttctccctctttctcatAAACCTCAGTCTGGACTGGTGTGATATTTGCAAAACTGCCACCTTCAAAATCATCAAACAGCACAGAGaaaaagaatcaaaattcaTGGAAATGTGTCCATAAAACTAAGCCAAAACAAACTTATTAATCTCAATTTGCCAAAATAgttgaaaaagacaaataaatagaatacttacatagaaagaaacaaatcaaaCCGGTTAAACAGCAcaacatgatgatgatgagtaGGATAATGAAACTGTTGTTCGGCTAAACTTTCTGTTCCTCCCTTGTCACACAAACTCCTCCCCTGAAAGCTGTATTAAAAAGAGCACTGAAAAACTGAATGAGCAGCAGTATAGAATCATTTAACAAACCATTCGTTCCTTGTCAAGTACAGGAGAAAGTCTCAGATTTACATCTACCTTAAAATTTGCAGACTATAATAGATTAGGAGACGAGACTTGCAGGGCAGGAGTTTTAATGTAGTACCACTGGAGTCAATACAATGAGTTATCATCTTACTGTACTGTTTCCACCTAAGTACATACTTCCTTTTCCTCGAGCAGGTGTTACAAATATTGTGTTTGTGAAAAAAGTGTTGAGGTTTTACACGATCACTGTGCTCCTACTCTCAGAGCACAGTAATAGAGAGCTGAGTCTGACAGAGTTACACTCTTAATAGTGAGATCAGTGGATGTTTGGGATGTAGACGACTGAAAGCGACGGTCTGGTATATTCTCATAACTGCTCCGTGATCTGGCAcctttatacagtaaatattctGGTTCTCTGTTCGGATACTGTCTGAACCAGTAGAGATAGATATAAGTGCTGCTGGCATCATATGAGCAGCTCAGTGTTACACgctcttcttcttttctgtaAATAGTAGTTTCCTTGTCTTTTGGTTGAATGCTGTCAGATAAAACACCTGCAAGAGAATTGGaaaagttttacaaaaagtaaGCTGGGTTGTCCAAGAAGTCAtcacatttctaaattaaaaagac

Function

GO:

id name namespace
GO:1990138 neuron projection extension biological_process
GO:0048588 developmental cell growth biological_process
GO:0048675 axon extension biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18821 lncRNA upstream 108 16833060 ~ 16839463 (+) True LOC122356672
XR_006252365.1 lncRNA upstream 5257 16830108 ~ 16834314 (+) False LOC122356672
TU18820 lncRNA upstream 7688 16830649 ~ 16831883 (+) True G12730
TU18819 lncRNA upstream 10245 16827030 ~ 16829326 (+) True G12729
TU18751 lncRNA upstream 55027 16783900 ~ 16784544 (+) True G12669
TU18846 lncRNA downstream 50350 16892781 ~ 16893081 (+) True G12753
TU18854 lncRNA downstream 58486 16900917 ~ 16910872 (+) True G12759
TU18871 lncRNA downstream 87077 16929508 ~ 16951713 (+) True G12773
TU18875 lncRNA downstream 94501 16936932 ~ 16957259 (+) True G12776
TU18880 lncRNA downstream 104443 16946874 ~ 16955877 (+) True G12781
XM_043262457.1 mRNA upstream 63224 16771371 ~ 16776347 (+) False LOC122361622
XM_043255548.1 mRNA downstream 1290 16843721 ~ 16847555 (+) True LOC122356618
XM_043220730.1 mRNA downstream 152258 16994689 ~ 16996615 (+) True ing5b
XM_043220723.1 mRNA downstream 152262 16994693 ~ 16996615 (+) False ing5b
XM_043220682.1 mRNA downstream 154658 16997089 ~ 17009227 (+) True pak2a
XM_043220670.1 mRNA downstream 167135 17009566 ~ 17014352 (+) True klhl6
TU18526 other upstream 570774 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2056594 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2056867 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2659956 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 189888 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 519814 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 724410 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 764821 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 936908 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile