RNA id: TU18874



Basic Information


Item Value
RNA id TU18874
length 311
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G12776
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16936932 ~ 16957259 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTTCCTGTCACTGTGGGCGTCAGGGCACAGTAATACAGAGCAGAGTCTGTCACTTTAACAGAGGAGATCTCCAGGCTCACaagattgttgtttttatcaactTGAGGTATGATACGATCAGGAAGAGGGTCACTTGTTAATCCATGAGGATAAATATATGCGAGGAACTCCGGTTTAGATCCTGGATATTGTCGATACCAGTGCAGGTTACTTACATCTCCATCATATTTACAGGATAGAGAGACTTTTTCTCCCTCAGATGTAAGTGTCTGGTTTTCCAGCGGTGATATTGACTGTGCAAATGTCTCCt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18854 lncRNA upstream 37255 16900917 ~ 16910872 (+) True G12759
TU18846 lncRNA upstream 55046 16892781 ~ 16893081 (+) True G12753
TU18800 lncRNA upstream 105696 16839571 ~ 16842431 (+) True G12711
TU18821 lncRNA upstream 108664 16833060 ~ 16839463 (+) True LOC122356672
TU18820 lncRNA upstream 116244 16830649 ~ 16831883 (+) True G12730
TU18889 lncRNA downstream 1149 16958408 ~ 16967102 (+) True G12784
TU18885 lncRNA downstream 5469 16962728 ~ 16972538 (+) False G12782
TU18884 lncRNA downstream 13103 16970362 ~ 16972538 (+) True G12782
TU18939 lncRNA downstream 165880 17123139 ~ 17123367 (+) True G12818
TU18944 lncRNA downstream 175818 17133077 ~ 17134888 (+) True G12823
XM_043255548.1 mRNA upstream 100572 16843721 ~ 16847555 (+) True LOC122356618
XM_043262516.1 mRNA upstream 171780 16771693 ~ 16776347 (+) False LOC122361622
XM_043220730.1 mRNA downstream 37430 16994689 ~ 16996615 (+) True ing5b
XM_043220723.1 mRNA downstream 37434 16994693 ~ 16996615 (+) False ing5b
XM_043220682.1 mRNA downstream 39830 16997089 ~ 17009227 (+) True pak2a
XM_043220670.1 mRNA downstream 52307 17009566 ~ 17014352 (+) True klhl6
XM_043220673.1 mRNA downstream 52310 17009569 ~ 17014352 (+) False klhl6
TU18526 other upstream 679330 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2165150 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2165423 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2768512 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 75060 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 404986 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 609582 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 649993 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 822080 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile