RNA id: TU18886


Basic Information

Item Value
RNA id TU18886
length 446
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G12782
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16950834 ~ 16978756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTTTTTGTAGAGAGCTGATGTGTTTCCTGTCACTGTGGGCCTCAGAGCACAGTAATACAGAGCAGAGTCTGatacagcagcagaggagatgATCAGATCCACATGGATTTGTTCTCCTTTTCGAACTTTAACAGTAAATCTTGGATCTACATCAGACGGCTGAGCTTCTTTTGCAGTGCTGTAGCAGGTTTTTGTATAGAGCTGATGTGTTTCCTGTCACTGTGGGCCTCAGAGCACAGTAATACAGAGCAGAGTCTGatacagcagcagaggagaggATCAGATCCACATGTTCCTTTTTTGGAATGATAACAGAGAATCTTGGATCTACATCAGACGGCTGAGCTTCTTTTACAGTGTCGTAGGTTTTTGTAGAGAGCTGATGTGTTTCCTGTCACTGTGGGCCTCAGAGCACAGTAATACAGAGCAGAGTCTGatacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18854 lncRNA upstream 39962 16900917 ~ 16910872 (+) True G12759
TU18846 lncRNA upstream 57753 16892781 ~ 16893081 (+) True G12753
TU18800 lncRNA upstream 108403 16839571 ~ 16842431 (+) True G12711
TU18821 lncRNA upstream 111371 16833060 ~ 16839463 (+) True LOC122356672
TU18820 lncRNA upstream 118951 16830649 ~ 16831883 (+) True G12730
TU18939 lncRNA downstream 144383 17123139 ~ 17123367 (+) True G12818
TU18944 lncRNA downstream 154321 17133077 ~ 17134888 (+) True G12823
TU19158 lncRNA downstream 182420 17161176 ~ 17162972 (+) True G12972
TU19161 lncRNA downstream 203428 17182184 ~ 17270444 (+) True G12975
TU19169 lncRNA downstream 208361 17187117 ~ 17190607 (+) True G12982
XM_043255548.1 mRNA upstream 103279 16843721 ~ 16847555 (+) True LOC122356618
XM_043262516.1 mRNA upstream 174487 16771693 ~ 16776347 (+) False LOC122361622
XM_043220730.1 mRNA downstream 15933 16994689 ~ 16996615 (+) True ing5b
XM_043220723.1 mRNA downstream 15937 16994693 ~ 16996615 (+) False ing5b
XM_043220682.1 mRNA downstream 18333 16997089 ~ 17009227 (+) True pak2a
XM_043220670.1 mRNA downstream 30810 17009566 ~ 17014352 (+) True klhl6
XM_043220673.1 mRNA downstream 30813 17009569 ~ 17014352 (+) False klhl6
TU18526 other upstream 682037 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2167857 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2168130 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2771219 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 53563 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 383489 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 588085 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 628496 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 800583 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile