RNA id: XM_043256557.1


Basic Information

Item Value
RNA id XM_043256557.1
length 2513
RNA type mRNA
GC content 0.41
exon number 12
gene id golim4b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17032139 ~ 17039903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGAACAAACTCACTATAATGATAGTCCTTTGTGAATGACACGTatgaaagttttgaaaaagCCAATTCATAGTCATTAGTCGGACTTACTTTTTCCGTAAGGGATAAGTAGCCTATAATTAGGGCTAAGTTGAGGAGCCCAGGAGAAATCAACTGGTGCGTCCCTTAAAGGAACAGCATCgcgaggagagaaaaaaaataaacagacggATCATTGTGGCTTTTCTAAACATTTACGTTACCGAAGAAGAATCGGATGGCACATAGTCTTTACTGCCTACTCAAGAAAAGGAGGAAAGGATGGGGAAAGGAATTTGTTCGAGACGACAGAGAAGAATATTTCAGTCTTTCCTACTTCTCATCTTCGTCTGCGGGACGTTGTGCGCCTTCATGATCTCATACGAGATGCATAAAGAGCTGAAAAAGACTGAGGCGACGGCTTTGAAGTACCAGCAGCATCAAGAGTCACTTTCTGCGCAGCTGCAAGTGGTATATGAGCATCATTCTAAACTAGAGAAATCCCTCCAGAAGGAAAGGCTTGAGCATAAGAAGGCTGAAGAGGATTTGCTTGTGTTTAAGCGGGAATCACAGAAGGCCCTCAACAAAGAAAAGCAAGAATCAACCTATCGACTGAATGCCCTGCAGACAGAGCATCAAATACTGAAGTCCCAGCATGAAGACTTGAAGATGCAATACTATGAACTTCAAGAGAAGCACCAGAATCAAGGGCAGCATCATGAACGTGTTCTGGATGAGCACAGGTTGGAAATAGACAACCTGCAGAGGGAGAAGGAGGTTGAAATTTCCAGACTGAAAGAGAATGTGTACAACCTTCGAGAGGAGAACAGACAGCTGCGGAAAGCTCATCAGGACATCTACGCACAGTTACTTGATGTGCAGGAACAGCACAAGAACCTGCAAGCTTCAAAAAATCATCTGTCACTCACAGTACAAGACCATAAAAACGCACTTGTCGCCGCCCAGCTTCAGGTGGAAGAGCTGAGGCGATTAAAGGAGAATCGCAATAAAGCATCCAGTGCAGGCCGAGAGGCTAAAATTGATCAATTTGCAACCGAACGCACTCCCAGCTATATACTGGAGACTGTAGAGCACCTAAATGAGGAGCTGCATAATAAGCCCATTCAGGTGGAAGGGTATGAGGAAAATGGAAAAGGGTTATCCCCTCAAGGTGTGTTGGAGATTGAAAATAACAATGCGACCAAAGTGGCAATGAAGCAGCCTCGGCAAATTGATATTTTTGCTGAGGGAAAAGGCAAGAAAGAGGAGAGAAGCACATCAAAGGATAGAGGAGGAGAGGATAAGGGGAAAAAGGCAGTGCTGGAACATTCCTTATCAAACCCAGAAGAGCTGGGCATTAACCCTCGCAACACGCTAAGCCAAAGCCCGgagaaacagacacagacagagccACTTCACAGAACCAAAGTACACTTTGAGGCTTTGGATACAGTTATTGCCGGGAATGCCTTGCAATCACACTATGCTATGGCTGGACGAGAAGATGTAAAGGAGatgcaaaaacatgaaaagGgcaaagggggaaaaaaactgaactcTGTGAATGAGGCCAACAACCAGAACGAAGATGAATTTAAAGAGGCAGGAGAAACCGAGTACAAGGGAAATGCGAATAAGATCAGGCCTGAAGAGGATGAGCAGCTTGTGgGCCACGGTAAACTGAACGAAAACCCAGAAGCTGAAAACGATGCCAATCAGATGGAGAGCTTCCAagaaaaactgataaaaagaGGATGAAGAAGATCTTAGGGAAAGCAATCAAAAGCCTGAGATGTGAAGGGGACTGATTCTATGAGTGGCTTTACATGTCTCTTCTTGAAGAAAACTAAAGTGCAACAACTGTGATCCCTTGTTTTTTAAAGTGACTACTTATGCAAGCGCCTTGTACTTCCAAGTACGAGGATTTGTTTAgcattcatatttaatcaaaGCATTGTATCTTTTTGATCTTACTAAGGCGATATGAAATGGCTCCCTGCTgaacaaaaataagtaaactTTTGATTTGTTATGTCAGAGAGTAGTTGAATGACTTcttagaatattattttttaatattcccTCAGTTCTGTGCTTTACAGTTCTGGGGTGGAAAAATATGTACTCGGATTATTCTTCAGACTCATACTTATTAAAAGTAGTAATGAAGTAAAATGGAAAGACGTTAAAGTGTAAATTATGAGCTCTGTTGTATTCTGTTATTATCGAATGACATTTTTATGCTACTCAGTAATAAACGTAAATCATTGAACATGTGGACATCAAATGTGcttataaaaaaagagaaaaaatgagCTACtctatatttttgaaatatttacatgaagcCAGATgtgtgatttctttttcttttttttagctttaataaaattgatttatgTGGATTTCTTTGTAATTTGTCTTAACAGCTCAAACtattatttatactgtatatcgGTTTTGTTTTGGCGAATTAAATGCCGTATGTGGACTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 53383 16950834 ~ 16978756 (+) False G12782
TU18885 lncRNA upstream 59601 16962728 ~ 16972538 (+) False G12782
TU18884 lncRNA upstream 59601 16970362 ~ 16972538 (+) True G12782
TU18889 lncRNA upstream 65037 16958408 ~ 16967102 (+) True G12784
TU18875 lncRNA upstream 74880 16936932 ~ 16957259 (+) True G12776
TU18939 lncRNA downstream 83236 17123139 ~ 17123367 (+) True G12818
TU18944 lncRNA downstream 93174 17133077 ~ 17134888 (+) True G12823
TU19158 lncRNA downstream 121273 17161176 ~ 17162972 (+) True G12972
TU19161 lncRNA downstream 142281 17182184 ~ 17270444 (+) True G12975
TU19169 lncRNA downstream 147214 17187117 ~ 17190607 (+) True G12982
XM_043224682.1 mRNA upstream 2337 17025183 ~ 17029802 (+) True ptx3b
XM_043224672.1 mRNA upstream 2337 17025191 ~ 17029802 (+) False ptx3b
XM_043220670.1 mRNA upstream 17787 17009566 ~ 17014352 (+) True klhl6
XM_043220673.1 mRNA upstream 17787 17009569 ~ 17014352 (+) False klhl6
XM_043220682.1 mRNA upstream 22912 16997089 ~ 17009227 (+) True pak2a
XM_043223951.1 mRNA downstream 99 17040002 ~ 17044773 (+) True pdcd10b
XM_043218488.1 mRNA downstream 54281 17094184 ~ 17105967 (+) False nrd1a
XM_043218479.1 mRNA downstream 54294 17094197 ~ 17105967 (+) True nrd1a
XM_043255953.1 mRNA downstream 69663 17109566 ~ 17123064 (+) True fam163aa
XM_043255971.1 mRNA downstream 69663 17109566 ~ 17123064 (+) False fam163aa
TU18526 other upstream 763342 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2249162 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2249435 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2852524 14175364 ~ 14179615 (+) True G11854
XR_006252905.1 other downstream 322342 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 526938 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 567349 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 739436 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 744276 17784179 ~ 17816764 (+) True G13137

Expression Profile