RNA id: TU18939



Basic Information


Item Value
RNA id TU18939
length 229
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G12818
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17123139 ~ 17123367 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTTAGTGTTGAGTAATAGTGTTATTCTAGCTAAGACAGAATCAAGAGCAAAAACTTTGAAAGTTATTTCGAAGCAATTGTCTGCAATCAACATTTTGTAGCACTAAAAATTTGGGGTCAGCGagtttatttatctatttattgatGAAGTTATGCTCATgaatgtttttggggtttttttcaccAAAGCTGCAATCATTTGattgaaaaagtaattttggCAAATATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 144383 16950834 ~ 16978756 (+) False G12782
TU18885 lncRNA upstream 150601 16962728 ~ 16972538 (+) False G12782
TU18884 lncRNA upstream 150601 16970362 ~ 16972538 (+) True G12782
TU18889 lncRNA upstream 156037 16958408 ~ 16967102 (+) True G12784
TU18875 lncRNA upstream 165880 16936932 ~ 16957259 (+) True G12776
TU18944 lncRNA downstream 9710 17133077 ~ 17134888 (+) True G12823
TU19158 lncRNA downstream 37809 17161176 ~ 17162972 (+) True G12972
TU19161 lncRNA downstream 58817 17182184 ~ 17270444 (+) True G12975
TU19169 lncRNA downstream 63750 17187117 ~ 17190607 (+) True G12982
TU19172 lncRNA downstream 81047 17204414 ~ 17206481 (+) True G12985
XM_043255953.1 mRNA upstream 75 17109566 ~ 17123064 (+) True fam163aa
XM_043255971.1 mRNA upstream 75 17109566 ~ 17123064 (+) False fam163aa
XM_043255961.1 mRNA upstream 75 17109582 ~ 17123064 (+) False fam163aa
XM_043218488.1 mRNA upstream 17172 17094184 ~ 17105967 (+) False nrd1a
XM_043218479.1 mRNA upstream 17172 17094197 ~ 17105967 (+) True nrd1a
XM_043253529.1 mRNA downstream 1414 17124781 ~ 17128359 (+) True rabgap1l2
XM_043253285.1 mRNA downstream 22006 17145373 ~ 17147065 (+) True gadd45bb
XM_043218601.1 mRNA downstream 88509 17211876 ~ 17219198 (+) True slc1a8b
XM_043254494.1 mRNA downstream 106513 17229880 ~ 17233863 (+) True pex19
XM_043254492.1 mRNA downstream 110691 17234058 ~ 17244433 (+) True copa
TU18915 other upstream 85842 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 854342 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2340162 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2340435 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2943524 14175364 ~ 14179615 (+) True G11854
XR_006252905.1 other downstream 238878 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 443474 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 483885 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 655972 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 660812 17784179 ~ 17816764 (+) True G13137

Expression Profile