RNA id: TU19206


Basic Information

Item Value
RNA id TU19206
length 1466
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G13007
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17386062 ~ 17387548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTTGAATGCACCTCACTGCTTTATTTACAGCAGTTATTTCCATTGATATCAAGATCTGACATCCGAAGCCGAAGGCGTCTAGATACTCCTGTGCATCTTGGAGCTGCTGGCTGATCAGAGGTCCAGGATGATTAGTATGATTTTCAgattagaaaaaataaagattcgagacaaacatgtaaaaacatttctacaACCGGCAATAACTCTCGAATGACAACATATCATCTATgtacaaaaacatcaataatatatttatatatacttttatcatcatcatcatcatcatcatcatcatcatcatcatctatacccactaaaatatatcaaagcAGCAACTATTGGTCAATCTGAGGAACTCTTTTAGTCAAAAGTCctgaaaacagtttaaatatcCTTCAGCTGTAAATGTGTGAACACCAGGGGGAaacaaaagaagagaaagagcaCAGgtaggcaaataaataaaaaaataaagagtccaaaAATCTGTTCGTTCTCTGTGTAGTCTGGAATACTGAGTAGCAGGTAGAAAAGCAGTGTCTTGTACAGGCTTCCCCTGTAGACAGTTTGCTCTTGGAAGGACGCTTAATGCCATCCTACAGTTCCCAAGTTCAACAAATTCGCCACCAAAGCCCAAAGTGTACAGATTGAGACACAACTCCATGTTGTCATGACGTAGGCCACAAGCAGAGTAAggtcactttttttcttttcattttttcttagATTCTGTCTTTTTCTGGTGAGAGTCAGGTAGAATCTGTTGGTGGACGAGGAGATGCAAGGTTTAAAGCAGCCTTCTGGTTGTCTGAGGTTAATTTCACAGTTTGTTCCATTTGACCAGTTCTTGAAACttggcaaatatatatatatataaaaaaaaaaaaaaaaaaaagacagaaaagaagcAGTTGATGTgtatctgttttaaataaaagaaaaaaaaaaccctgcaccctgtatcatcatcatcatactgaggcagaaaagaagaaaacgaATGTCCTGAGATTACTTTCTGAAGGGCTTCTGATATAGAGCTCGATAAAAGTGAATctataaaatgatgaaaaacaacCTAATCTAGCTTAATGGGGGCAATAATATTAAGAAGGGTTAGATCGGGGTAGGGATAAGATCCGTCCGTTTTTCTTGCTGCCATTCATGTGTGTATACGGCACGTGTTCCTCATAACTCCCCCGAAGACCCACGGATGAGCCCTCGTCCCCGTCTAGACAGCACTCCCTCTGAGAGTACGAGGAAGGGTCCAGCGGGATGCTCTCCATGTTCTCCATGTCCATATCAAAATCTTCTGTCTCGGGGGGCTTGTTCTCCTCACTGTAGAAGAAGGAGACCTCCTGAAACGAGGGATGCAGATCCTCCCGGAGCATCTCGATGATCTCCTGGAAGGTGGGTCTCATTTTGGGATTGTAATGCCAGCACATCTGCATCAGGTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19186 lncRNA upstream 100232 17281260 ~ 17285830 (+) True G12995
TU19164 lncRNA upstream 112900 17272654 ~ 17273162 (+) True G12977
TU19161 lncRNA upstream 115618 17182184 ~ 17270444 (+) True G12975
TU19304 lncRNA downstream 92176 17479724 ~ 17480102 (+) True G13075
TU19305 lncRNA downstream 92675 17480223 ~ 17480494 (+) True G13076
TU19267 lncRNA downstream 139629 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA downstream 141453 17529001 ~ 17529390 (+) False G13049
XR_006252552.1 lncRNA downstream 222602 17610150 ~ 17612100 (+) True LOC122357958
XM_043262116.1 mRNA upstream 16960 17362245 ~ 17369102 (+) True sppl2
XM_043253020.1 mRNA upstream 43003 17333696 ~ 17343059 (+) False phc3
XM_043253046.1 mRNA upstream 43003 17333696 ~ 17343059 (+) False phc3
XM_043253074.1 mRNA upstream 43003 17333696 ~ 17343059 (+) False phc3
XM_043253065.1 mRNA upstream 43003 17333696 ~ 17343059 (+) False phc3
XM_043220234.1 mRNA downstream 85990 17473538 ~ 17478940 (+) True myadmb
XM_043220242.1 mRNA downstream 86039 17473587 ~ 17478940 (+) False myadmb
XM_043223790.1 mRNA downstream 93156 17480704 ~ 17485854 (+) True ftr66
XM_043221436.1 mRNA downstream 113795 17501343 ~ 17506122 (+) True ltb4r2b
XM_043255265.1 mRNA downstream 121238 17508786 ~ 17511815 (+) True sdr39u1
XR_006252905.1 other upstream 18201 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 348765 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1117265 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2603085 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2603358 14776322 ~ 14782704 (+) False ackr4a
TU19352 other downstream 179293 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 219704 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 391791 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 396631 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 3028655 20416203 ~ 20429345 (+) False crlf1a

Expression Profile