RNA id: TU19267


Basic Information

Item Value
RNA id TU19267
length 2115
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G13049
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17527177 ~ 17529390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGATGATGGTGAAAGAGATGACCACAGTTGATCCTAAAGCGATGATCACAGCAGTTGTGTTGTGATATGAGGCTACAGTTCCCACCATGTAGGACAGACTCAGCGTGACCACTGACTGCAGGCAATAATAGGGCATGTATGAAACAATTCTATAAAGGCGTAGCCTATAATTAAAGTGTTGAGTGTAATAATGCAACGATTTCTGATCAAGGCAAGTAGCaacaaataatacacaaataaaatgcatttttagaacTACTTAGACTTGTGTGTATTCATTTCtaagttacaatttaaaaaatgacacaaaatgcaACCTGTATAGACACATGAACAAATAAGAGCATGGTACATCACATGACAACGGAGATGGAAGCAAAATGAGTATAGCTGTGAATATTGTGGAAATTCTGTTAGCATTTTTCTGTGCAAACAGCTGCAAATCTATGAGTGAATGAGGCCTACTTTTTTAATGATCTAACGTAAAAGCTGTTCAGGACATCACAGCTCTTTGGAAAATGTTATTATGATTAGTAATCACTGAATTTTGTGGTCAtttctaaaagtagtttgatGTATAGCTGAATGTAGTTTCATTTCATCCTTTTTCTCACAAATCAGTATTTCATGTTTATCATGTTTCATTTAGCTGAATAATAAGCAAGATGATGTAGAGTCAGAACTATGACCAAAATAACCTcttcctatttatttttcagatgatACCTGCTGTAAATAATGTTCACATTAACTTTTACATATAGGCCACTGCACTTACAAAAGAAACACAGGCTGTCATGATCATGGAGAGGAAGTAACCAAGTTACAAAATCTATTGGCTGATTTAAAGGAAGGAGATTTTTCCTAGGTCAACCTACGTTACAGAATGTTGTTAAGTAGTACATTTTGGGGAAAATTCAGAATGAACAAAGAGAAGAAGCCAACTTGGTTAACTGAAATGCTGCATTTCAAAGTTAGAGAGTTTCAGACTGTTTTTAAGCTACTGTATCTGTAACTTTAAGAAATATTGtacctttacattttaatgtagagatcatatatacaaaaagtgaattaaaaagtTGTAAGACATGAACCAAAAGATGGATGATAACTTTACATTACATACTGAAAATTGGACAAAAAAGCGAATAAAGTGTACTTAAACTACAACCCTCTGACACATTGCAAATGACAATgaagaaatattaaacaattaatttaaagaagctgatatttatgtatttacatgcataaagGAATCATAAgtgaagtcattttaaagtaaagaatTCCTGtgtaaaaataagtcaaaacaACGTATGCTGTTGTCTTCAACAAAAGCATATGCCgtcaaataaacaatgttgGAAATCAGTTacactacagaaaaaaagaagtgatTTTTACCTCTGGGACCTAACTGTTGCATTCTATTTTACATCTCCTTACTGTAGGCGCCATATTGTATGTGTCTATATAATGCACTGCATGAAGACACGTATCAATGCACGGACACTCACCAGTCCCAGCAGGTTCCAGGGATGTGTGCGGCTGAATTTGGAAAACACAGCAAGACATGAGCCCACTACTACAAAGATAATGTAAGAACTGAGGTACACCCAGATGTTACTCTGAATCGCCGTCTTGACTGTGTTTGAGAAAGTGAATACACAGACGACGGTGAAAGTGACTAGTAGCTGAATTGTTACCACACTGAACACCTgagtagagagagagatcgGAAATGACAAAGAGGATTAGCATTCAGAGCAATCGCATTATTTACGATGGCATGCGATTCACAGAAACGCTCACCTTTCGGATGAATGCTTTCCGAATGGTATCGTCCTCAAATGATGACACAAACAACTCCTCAGCtggaaaACCTGCTGGGTCTAGATACGGTTCTTCTGTTTTGTTGATGCCGGTCTCTTCTGGTGGCAGGTCTGGTGGGATGAAGCCGACTGGcgcaggaacaggttgagggttCATGACAGGCCCCGTAGGATAAGGAGGAGGCATGTATGGAGGTGGGGCATACATTGCTGCTGTCGCTGCATGGCTAGGGTCGGTCTCAGGTGCAGGTTTTTGGCTCTCTATATCTGTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19305 lncRNA upstream 46683 17480223 ~ 17480494 (+) True G13076
TU19304 lncRNA upstream 47075 17479724 ~ 17480102 (+) True G13075
TU19206 lncRNA upstream 139629 17386062 ~ 17387548 (+) True G13007
TU19186 lncRNA upstream 241347 17281260 ~ 17285830 (+) True G12995
TU19164 lncRNA upstream 254015 17272654 ~ 17273162 (+) True G12977
XR_006252552.1 lncRNA downstream 80760 17610150 ~ 17612100 (+) True LOC122357958
TU19350 lncRNA downstream 146682 17676072 ~ 17678382 (+) True G13112
TU19359 lncRNA downstream 170199 17699589 ~ 17699825 (+) True G13121
TU19339 lncRNA downstream 176606 17705996 ~ 17768737 (+) True G13101
TU19420 lncRNA downstream 340888 17870278 ~ 17871416 (+) False nedd8l
XM_043253119.1 mRNA upstream 2408 17518812 ~ 17524769 (+) True parp2
XM_043255265.1 mRNA upstream 15362 17508786 ~ 17511815 (+) True sdr39u1
XM_043255276.1 mRNA upstream 15362 17508786 ~ 17511815 (+) False sdr39u1
XM_043221436.1 mRNA upstream 21055 17501343 ~ 17506122 (+) True ltb4r2b
XM_043223790.1 mRNA upstream 41323 17480704 ~ 17485854 (+) True ftr66
XM_043253189.1 mRNA downstream 7123 17536513 ~ 17537813 (+) True cbln13
XM_043257641.1 mRNA downstream 101974 17631364 ~ 17652724 (+) True LOC122357951
XM_043258476.1 mRNA downstream 153114 17682504 ~ 17687392 (+) False apol1
XM_043258470.1 mRNA downstream 153124 17682514 ~ 17687392 (+) False apol1
XM_043258461.1 mRNA downstream 153369 17682759 ~ 17687392 (+) True apol1
XR_006252905.1 other upstream 159316 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 489880 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1258380 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2744200 14776322 ~ 14782977 (+) False ackr4a
TU19352 other downstream 37451 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 77862 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 249949 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 254789 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2886813 20416203 ~ 20429345 (+) False crlf1a

Expression Profile