RNA id: TCONS_00011035


Basic Information

Item Value
RNA id TCONS_00011035
length 477
lncRNA type read_through
GC content 0.28
exon number 2
gene id XLOC_004963
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46188296 ~ 46231871 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGtggaataaatttattttatcctCAAATACCTTTTGAATGTTTATGCCGCTGTACTGAAACTTTACTAAATGCCTGAATcctaaattaaacacattttcacaAAACAATTTCTTTTAACTAATTACCTTTTATAACTTAAagattgaaaaaaagaaaaagaccaacccaagttttttttttttttttttttttttttgtataatttgaaTAAACGTATCATTTACTGTTTTGGATCTTTGTTAGACTGCTAAAGTATATCATGTCCTCACACATATATATAAGTCTGTGTAAAAATTTTAAGTAAATACCATATAAAATTGTTATATAATAAAGAGATACCACATCCATTAAAATGAGCCAAACTAAATGTTGCACTTTCTGTGTCACTAAACTAATACAGGGTGAAGAAACTCATCAGAGGAATGAACAACAGCACCAGAGAAGCACACAGACAAGAAGCCTCAGAAACCTTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011029 lncRNA upstream 44190 45884016 ~ 46144106 (+) False XLOC_004960
TCONS_00011032 lncRNA upstream 67448 45884020 ~ 46120848 (+) False XLOC_004960
TCONS_00011034 lncRNA upstream 85876 46078647 ~ 46102420 (+) True XLOC_004962
TCONS_00011028 lncRNA upstream 93493 45883994 ~ 46094803 (+) False XLOC_004960
TCONS_00011031 lncRNA upstream 93493 45884018 ~ 46094803 (+) False XLOC_004960
TCONS_00010774 lncRNA downstream 310800 46542671 ~ 46543189 (+) True XLOC_004970
TCONS_00009729 lncRNA downstream 451341 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00010775 lncRNA downstream 803850 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00011036 lncRNA downstream 1348151 47580022 ~ 47580566 (+) True XLOC_004991
TCONS_00010776 lncRNA downstream 1375000 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00009708 mRNA upstream 499343 45676667 ~ 45688953 (+) False XLOC_004957
TCONS_00009710 mRNA upstream 499701 45677293 ~ 45688595 (+) True XLOC_004957
TCONS_00009709 mRNA upstream 501209 45677293 ~ 45687087 (+) False XLOC_004957
TCONS_00009707 mRNA upstream 931085 45238292 ~ 45257211 (+) True XLOC_004955
TCONS_00009706 mRNA upstream 969818 45200744 ~ 45218478 (+) True XLOC_004954
TCONS_00009714 mRNA downstream 155112 46386983 ~ 46391264 (+) True XLOC_004964
TCONS_00009715 mRNA downstream 172436 46404307 ~ 46408636 (+) True XLOC_004965
TCONS_00009716 mRNA downstream 193929 46425800 ~ 46447830 (+) False XLOC_004966
TCONS_00009717 mRNA downstream 211606 46443477 ~ 46447830 (+) True XLOC_004966
TCONS_00009718 mRNA downstream 230219 46462090 ~ 46466474 (+) True XLOC_004967
TCONS_00009703 other upstream 1561289 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 4727662 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 5776614 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 6684618 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009670 other upstream 6757979 39430202 ~ 39430317 (+) True XLOC_004923
TCONS_00009724 other downstream 371570 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009746 other downstream 651973 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 683500 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 2584289 48816160 ~ 48825502 (+) False XLOC_005016