RNA id: TU20478


Basic Information

Item Value
RNA id TU20478
length 322
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC122326305
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20493174 ~ 20508391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCAGCTGCCTGCGACATTTCTTTGCGGTGAGGAAGTGCTTTGTTTTCACCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACTGGGAATGATCTAGATTCAGAGTTCCTTGAGCAGGAAAACACCTTCTGCCATTACATTTTTGACAGTGCAGATCCAAAAACAGTCAGCGGAAGCCGTGTAATTACTGGGACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAATGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTCCGTGCAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20481 lncRNA upstream 2529 20490111 ~ 20490913 (+) True G13884
TU20480 lncRNA upstream 6572 20486489 ~ 20486870 (+) True G13883
TU20467 lncRNA upstream 27596 20465527 ~ 20465846 (+) True G13874
TU20449 lncRNA upstream 29483 20463738 ~ 20463959 (+) True G13857
TU20410 lncRNA upstream 172054 20317181 ~ 20321388 (+) True G13821
TU20494 lncRNA downstream 27989 20532212 ~ 20532738 (+) True G13896
TU20455 lncRNA downstream 87495 20591718 ~ 20595093 (+) False G13863
TU20456 lncRNA downstream 87495 20591718 ~ 20595093 (+) True G13863
TU20511 lncRNA downstream 111935 20616158 ~ 20617660 (+) True G13909
TU20595 lncRNA downstream 395341 20899564 ~ 20946266 (+) True G13964
XM_043221036.1 mRNA upstream 19918 20467330 ~ 20473524 (+) True gbp2
XM_043220868.1 mRNA upstream 58020 20433469 ~ 20435422 (+) True odf3l2a
XM_043224406.1 mRNA upstream 64094 20416203 ~ 20429348 (+) True crlf1a
XM_043258251.1 mRNA downstream 15686 20519909 ~ 20529006 (+) False vcpip1
XM_043258235.1 mRNA downstream 15686 20519909 ~ 20527398 (+) True vcpip1
XM_043258243.1 mRNA downstream 15686 20519909 ~ 20527397 (+) False vcpip1
XM_043258304.1 mRNA downstream 33314 20537537 ~ 20539554 (+) True LOC122358486
XM_043253768.1 mRNA downstream 39603 20543826 ~ 20547503 (+) True LOC122355453
TU20479 other upstream 8224 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 20826 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 64097 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 2676678 17784179 ~ 17816764 (+) True G13137
XR_006247303.1 other upstream 2711078 17779339 ~ 17782364 (+) False LOC122325453
TU20649 other downstream 659719 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 660074 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 803184 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 833459 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 833459 21337682 ~ 21361708 (+) False G14211

Expression Profile