RNA id: TU20479


Basic Information

Item Value
RNA id TU20479
length 490
RNA type TUCP
GC content 0.49
exon number 4
gene id G13882
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20481664 ~ 20485218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAGATTATTACACGAGACTTCGCTTAGAAGACATTTGCACGTCGTCCAACTATCGTCATGGCGTGCAGCAGGGTCATGTCCGTCCCGGTGTGTCTCATTGAAAACGATGATAAAGGAACTCTGCATGTGAGAAAAGAGGCCAAAGACATTCTGGATGGGATCAATGAGCCGGTGGTGGTGGTGTCTGTGGTGGGACTCTATCGTACGGGGAAGTCTTACCTTATGAACCGCCTGGCAGGACACCAGTCCGGTTTTGCTCTCGGCAGCACTATTGAGTCAAAGACCAAAGGCATTTGGATGTGGTGTGTCCCTCATCCCTATAAAGAAGGACACACTCTGGTGCTGCTGGACACAGAGGGACTTGGGGACGTAAGAAAGGGGGATGAGAAACATGACACATGGATCTTCTGTCTAGCTGTTCTTCTCAGCAGTACTCTAGTATACAACAGTTTAGGAGTCATTGACAACACGGCACTAGAAAAGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20467 lncRNA upstream 15818 20465527 ~ 20465846 (+) True G13874
TU20449 lncRNA upstream 17705 20463738 ~ 20463959 (+) True G13857
TU20410 lncRNA upstream 160276 20317181 ~ 20321388 (+) True G13821
TU20420 lncRNA upstream 166683 20312046 ~ 20314981 (+) True G13829
TU20323 lncRNA upstream 865609 19613459 ~ 19616055 (+) True G13768
TU20480 lncRNA downstream 1271 20486489 ~ 20486870 (+) True G13883
TU20481 lncRNA downstream 4893 20490111 ~ 20490913 (+) True G13884
TU20474 lncRNA downstream 7710 20492928 ~ 20503339 (+) False G13880
TU20475 lncRNA downstream 16577 20501795 ~ 20503339 (+) False G13880
TU20494 lncRNA downstream 46994 20532212 ~ 20532738 (+) True G13896
XM_043221036.1 mRNA upstream 8140 20467330 ~ 20473524 (+) True gbp2
XM_043220868.1 mRNA upstream 46242 20433469 ~ 20435422 (+) True odf3l2a
XM_043224406.1 mRNA upstream 52316 20416203 ~ 20429348 (+) True crlf1a
XM_043224429.1 mRNA upstream 52321 20416205 ~ 20429343 (+) False crlf1a
XM_043224420.1 mRNA upstream 52322 20416206 ~ 20429342 (+) False crlf1a
XM_043221096.1 mRNA downstream 7956 20493174 ~ 20508391 (+) True LOC122326305
XM_043221087.1 mRNA downstream 7956 20493174 ~ 20495541 (+) False LOC122326305
XM_043258251.1 mRNA downstream 34691 20519909 ~ 20529006 (+) False vcpip1
XM_043258235.1 mRNA downstream 34691 20519909 ~ 20527398 (+) True vcpip1
XM_043258243.1 mRNA downstream 34691 20519909 ~ 20527397 (+) False vcpip1
XR_006247459.1 other upstream 9048 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 52319 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 2664900 17784179 ~ 17816764 (+) True G13137
XR_006247303.1 other upstream 2699300 17779339 ~ 17782364 (+) False LOC122325453
TU19349 other upstream 2873572 17607252 ~ 17608092 (+) True G13111
TU20478 other downstream 8224 20493442 ~ 20504223 (+) False LOC122326305
TU20649 other downstream 678724 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 679079 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 822189 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 852464 21337682 ~ 21361708 (+) True G14211

Expression Profile