RNA id: TU20610


Basic Information

Item Value
RNA id TU20610
length 2390
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G13976
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20961693 ~ 20966228 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGATcgtatacatttacaaaaatattttattaaaaataaatgtcagcgTTCTGTACAGTGTTAAAGAAGAACAGGGCATACAATCTAATTGAGAGATTAACTGAAAACATaagctatttaaatattaaatcaacaAATCCATTTTCTTGCCCAGACTTCATAGAATAGTACATCATAGAGACACAGAAATGAGTCTGAGAAAACAGaagataaatacacacacacacacacacacacactggcatcCTAACAGCAGAAATATGAGGAATTCTGTTCAGTTAATGCCACTTTTCTGATTTAGAGAATCTGCATTCTTATTACTTACAAAAGCCTCTTTTCTTTCACAGGTCTCTTTTACAttcataaacaataaaatacaaatgactgcgatttaaaatatacaatattgcATGAAAAGCAACATTTGTGACATCTACTTAAGTATCATGTTGACAATTCATAATGTtacaccttttttcttttttcatgcaAAACCCATGTACTTATCCTCACGTTATATGGAGCACAAACGGATGCAGCATTAAAGCTAAAGAGTAATTTCCCAGCTTCTAGCTTTGCGAAAAggatttgatcaaaattaataaacatgttCAAACGGGTTTCCAAAACACTCCCCGCACCTTTCATTAACAGATAGATCCGCCTCAAAATCACTCCATCGGTTGTGCCAATGTCGCTGCTTGGGtgcaaacaaacagagaaatcAACCtgcaaatgattcatttatagTTTGTCTCTGAATATAGAGATGGTatagtaaaacatattttttaccAAGACATGAAACAATTGACAGAGTTGTGCTTATGCtacaaactgaataaaagagTGCTATATAAAAAACCTGTAGTTAGGAGCAgtcttaaagagatagtttatccataaaattaacattcagattatttacttaccctcacgtaattctaaacctgtatgactttctcttgcagaaaccaaaagaaggtattttgaagaactgGTTTGGTCTACACAATGTAAGTACGCAAACTGTacgtttttgagtgaactatccgtTTAAACACTTATGTCAACATTATGTAATCACCAACATTATGTCACGTTTCTTGGTGAAATTTTAGGTCACTGTTACATTCAGCCATGAGCTTAAATGACTAATCAACAACTCCAAACAGCTCAATCTAGTGTACATAATTAaacttagatttaaaaaatgagtGGAAAGTGCTTTAACAATTTTGCATTTAACGCTGCACACATAAACAGGATCAGCTAAAGCTGAGACTATAAATATATTGATTTCCGATGTACTACATtaagtctttttcttttttaagaacCACAAATTGCAAAATTCATATCGGAACGTACAAACTTGTTTGAAATCTTACATGaagaaaattactttttattaacttaaaaattgaaatgcaaaatgtagTCAATCAGGTTTACTGAATAGATTGTGGCTGCtattaatgcaacattttatgttGCTTCGGATGGAAttacagtttattttctttatatttacagCTGAATTCTGTGCATaccaaaaatgctgtttatgtgTGCAGTGTGTAGCCGTTTCCTTAGCTTGTTctgatttaaatctaaaaaagaaaacatatttttccaCACAAATCAATTAAGAgttccagttttttttaaatacagagaacaGCAATAGTATACACCCAtcttaaaatgtatgtgtgtgtgtgtgtgtatgtgtgtgtgaggagcaTCCTCAAAGCAACATTAGCGACTtcttataaaaaacatttggccaaacaattgaacaaaaaaaaaaaaaagctaaaatccAGGCGATGCaacagaagaagagaagagacagGTAGTGTGTGAATCACACAGTCCttgagcagtgtttgtgaggGTTATTCTGGTTTGTGGCAGTAGATGTCTTTAAGAGCTTTGAGCTCCTCTATGAGAGTCTTGTTCTGGTTTTCCAGCACAGCGACGCGATTCTCCAAGCACTTGACGTATTCTTTCTTCTTCCTGCGACATTCGCGCGCTGCCTCCCTGCAACCTGTTCTTCATCAGGCGGACTTCTCTCTTGCGTGTGGCCTCCTCTGCGTTCTGCTGTGGGCTGTGCATGGCCCCGGGTGATGCTGCCATAACAACGCCTGGTGGTAACCCTGATGACGGGGAGCGGATCTGATACGCTGGCATGTCTCCTGTGGTAATCCAGTTGTGATTGTGTTTTGAGTGCTATCTTCTGTTTCCTATGtatttcctctctttctttcagctGCTTCACTGAACGATTTTCCTCCTCATACACTCTTTCTGACTATCTTAGTTCGAGTTGTGACACTTTGTGTTTTGCCTTTAACCCtccctctcgttctctctctctctct

Function

GO:

id name namespace
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20620 lncRNA upstream 4557 20955935 ~ 20957136 (+) True G13980
TU20595 lncRNA upstream 15427 20899564 ~ 20946266 (+) True G13964
TU20511 lncRNA upstream 344033 20616158 ~ 20617660 (+) True G13909
TU20455 lncRNA upstream 366600 20591718 ~ 20595093 (+) False G13863
TU20456 lncRNA upstream 366600 20591718 ~ 20595093 (+) True G13863
TU20640 lncRNA downstream 181952 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 182993 21149221 ~ 21150007 (+) True G13993
TU20642 lncRNA downstream 184430 21150658 ~ 21151136 (+) True G13994
TU20644 lncRNA downstream 185875 21152103 ~ 21153782 (+) True G13995
TU20627 lncRNA downstream 199860 21166088 ~ 21168887 (+) True G13983
XM_043263535.1 mRNA upstream 74149 20854977 ~ 20887544 (+) True efr3a
XM_043263525.1 mRNA upstream 74149 20854977 ~ 20887544 (+) False efr3a
XM_043263517.1 mRNA upstream 74149 20859022 ~ 20887544 (+) False efr3a
XM_043257567.1 mRNA upstream 169835 20778714 ~ 20791858 (+) True basp1
XM_043257497.1 mRNA upstream 183640 20772536 ~ 20778053 (+) True LOC122357864
XM_043261627.1 mRNA downstream 9311 20975539 ~ 21044413 (+) True pard3ab
XM_043261665.1 mRNA downstream 9311 20975539 ~ 21044413 (+) False pard3ab
XM_043261645.1 mRNA downstream 9311 20975539 ~ 21044413 (+) False pard3ab
XM_043261655.1 mRNA downstream 9311 20975539 ~ 21044413 (+) False pard3ab
XM_043261671.1 mRNA downstream 9311 20975539 ~ 21040956 (+) False pard3ab
TU20478 other upstream 457470 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 476475 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 489077 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 532348 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 3144929 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 197714 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 198069 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 341179 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 371454 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 371454 21337682 ~ 21361708 (+) False G14211

Expression Profile