RNA id: TU20627


Basic Information

Item Value
RNA id TU20627
length 2507
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G13983
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21166088 ~ 21168887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAAGTGTCATCAGTAATTTCATTCCCTCTCACTCTTTTCCTTCAACCAGAATCTTCCAAAACCACCCTGTACTGTTGGAATGATCCAGCGCCTTTGTCCATTGGTGGAACTCTCTTTCAACAAGTCATGGAGTTACTAttacacagtaataaaaaaaaaaattagctattattttaagtttaattaaatgtgtggCATTCCCCATGAAAGTCAATTAATTATCCTTCATGCACTGAAAAGGGAAGAATTTAGGGCTAATAACACAACTGCGCTCTTAATGGTCCTTATGACGTCACTTATAGGTACAAAACACCCAGAAAGCAATACAGCTGAAAACGATACAGAAGGTTGTCGTGTCCTGTAATTCACGATTCATAAGCATTCCTTTAACAATATCTGGAGTGTGAAGCCTAAGGAAAAATAAAGACTAGCTTGAATAATAATGACTTAGCATTTTTCTTATTGTGGATGCGACTTCTAAGCTCTCTTGAATTCAGAAACTAACAGAAAAATGTCTGCAGTGTCCTCAAGGAGATACAAGTTATTAATGTATGAAACATAAGCCCGCCCCCACCATCATTCTGTTAAACTGACTGGCTGATCAGTAACAGTGGCAGAGCGAGAAAGCAATGATATCACATGACAGCTTCTACAGATGTCAGCTGACCACTGCAAGTCCAAAAATACAAAGTGATGTATTAGTGAGGATACGTGCAGAAAAAGTaagagtaacacacacacacagctatctTAAATAGACATTTATGACTGTTAAAATAAGAAGTCGGATATGCAGGATGTGATCTGTGAAAAGCAGGACAGGACCACCTTCAGTTGTTTGGctacaaaaacagcaacaacaacaaaaaaaactaataattagcCTTTGCAACCGCAAGTTTGAATTGAGATGCTTCCAGCATTAGCCTGCTGTGTAAGGCTCAGTTACTCACGTCTACAATCCTTTCCACCTTCCCCTTTAGAACCATTAGTTACTACAGAAAGTAAAACCCATCTGGTTTCTGATCTGAATCCGTTCAGAGTACTTTCACACAGGAATATCTGAGTTTGTAGTGATACAGGAGATCCGCTGATGAGCACGCTTGGATATTCTCTATTCagggttgtttttgttttttttctattcaagCTTGCTGCAGTCTAGACGCTGACCCGTATGAAGTCGAGCCAGGAGCGAGGTCTTTTGCACAGTTATCAGGCAGTAGTTTAATCAGAGGTTACAGATGTGCAGAGAGCAGCCGAAGACTGATTAGAGCTGATTGCACTGCTTCTGTGTCAGTGGTTCGCTTTGCTTACTTTTAAATCTTGATTTCCGTTTTAGAACATGTTTGGTGCATGTGTGAGAGtgcaatattcataaaataatttgctttggagaaaaaaaaaaaaaaaaaaaaaaaaagggtgtgGGTGGGTTTGGTGGAACTGTACAGCCATGAATATTTCGATTCGGACGTCCTCCCATGTGCACCAGCAGGAGGGATTATGTTAATGGAATGACAGATCTCCGTGAAGTCTTCTTGCAGCTTCGgtagtgaggaaaaaaaacactcatcttcagCTTCTCTTGTTTAGCGCCGCCTCCTCTGATAGGTTGGCTGTTCTGGTAAAGTACGCCACCACCTCCACGCACTACGCTGGGGTGTGTGGGAGAAGCTACGGGTTGCTGTCCAGGCCTGATGGGTTTagctacaaacaaaaacatacaagcaAACCATGAGAGGAAAGGTCATGGACATTTTTTCTGTTGCATTAATTTAATAGTCACCTATCTGTGCGGAGTGTCCTCTGCGGGCCATGTTTTTGGCTCTCACAGCCTCTTTGATGCGGTCCACCTCTTGCTGGTAGCGCTTGCGGTCACGTGCCGCGTTCTCTTTGGCCTCTTTGAGTGCTGACTCTAGAGCCTTCACGCGCTCCGCCGTCGCCCGCAGACGCTTCTCCAGTTTAGGAAGCTCACAGCGCAGGTCAGCATTGTCACGCACCAGCTAAAAAAGACGGAAAAACCAGcgagtaaaaaaagaaaagagaaatctaTTCTTCAAACAATCAAGGggttaaaaagtattttcttattgtttaataaaatatgcatgttgttttgcacatttttatttccataaaaaatCCTTTGGCAACACGAATCAAAAAATTATGTGATGCTAGTAAAGAACAGCAAATCTTTCAATATAGAGTAGAAggaaaaatattacacacaagCAAAACGTTTGGAATTATGTTAGGAGTTTGCACATTTTGAACAAGTAAAGAACATTTACTGACATGTGTGAGtattaagattaagattaatTTTCTGGCTTGAATTTACCTGTTTGTGGACCTTGGTGAGTTGTTCTAGATTGTTCTCCAAGAAAGAGATCTTCTGCTTCTGAGCAGCACTGCCACCGGTCTCATCAGAGTCCATCTCTGCACTCTACACccagatgaaaaaacaaacagaaagttGACTAACATTACGAACTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20644 lncRNA upstream 12306 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 14952 21150658 ~ 21151136 (+) True G13994
TU20641 lncRNA upstream 16081 21149221 ~ 21150007 (+) True G13993
TU20640 lncRNA upstream 17576 21148180 ~ 21148512 (+) True G13992
TU20610 lncRNA upstream 199860 20961693 ~ 20966228 (+) True G13976
TU21039 lncRNA downstream 173484 21342371 ~ 21346101 (+) True G14234
TU21010 lncRNA downstream 196921 21365808 ~ 21370499 (+) True G14212
TU21083 lncRNA downstream 364358 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 387957 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 547884 21716771 ~ 21717992 (+) True G14315
XM_043255893.1 mRNA upstream 20798 21131009 ~ 21145290 (+) False epc1b
XM_043255881.1 mRNA upstream 20798 21133610 ~ 21145290 (+) True epc1b
XM_043255886.1 mRNA upstream 20798 21133612 ~ 21145290 (+) False epc1b
XM_043255904.1 mRNA upstream 35759 21123039 ~ 21130329 (+) True LOC122356829
XM_043255911.1 mRNA upstream 43334 21116470 ~ 21122754 (+) True itgb1b.2
XM_043260565.1 mRNA downstream 16322 21185209 ~ 21204873 (+) True arhgap12a
XM_043218333.1 mRNA downstream 58436 21227323 ~ 21246000 (+) False nlrb5
XM_043218330.1 mRNA downstream 59752 21228639 ~ 21246000 (+) True nlrb5
XM_043218349.1 mRNA downstream 59752 21228639 ~ 21246000 (+) False nlrb5
XM_043218341.1 mRNA downstream 59752 21228639 ~ 21246000 (+) False nlrb5
TU20649 other upstream 1266 21163942 ~ 21164822 (+) True G13998
TU20650 other upstream 1266 21164297 ~ 21164822 (+) False G13998
TU20478 other upstream 661865 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 680870 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 693472 20467268 ~ 20472616 (+) False gbp2
TU21005 other downstream 138520 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 168795 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 168795 21337682 ~ 21361708 (+) False G14211
TU21079 other downstream 312789 21481676 ~ 21482318 (+) False LOC122354659
TU21151 other downstream 546468 21715355 ~ 21716287 (+) False ccl20a.3

Expression Profile