RNA id: TU20644


Basic Information

Item Value
RNA id TU20644
length 1680
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G13995
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21152103 ~ 21153782 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGCAGAATCATCATTAATTTTTCAGATGTTAAATAGCATCCAAAGAGATCCAGTTCCTGGAGGCACTGACAGAACTGAGAACAGTACAACAGAGCCCAGCAGTCTGTTCTTCTAAAGATTGCTGAATATGCATTAATCCTATTCCAGGATTTCATAGCTTTTGTCACATAGTCCTCTTCATGAAGTTCATAGAGACAGTGAAGAATAAAAAGGGTTCTATTATAACAAATATCCCTTTGGAGCTCTTTTAAAATCCACTCTTTAAGAAGGGCCTGTGTGTTTGGGTGAACAAACAGACACAGCGATTTCCTAAGTGTGTGTCGTACACCCTTATTCAAGAGACCAAACGCAAACTGAACCACAGCTGCACAACATGGAGGATGCTCTAACCATTCATTGTGTTGAAAGGAAATTAGCTGTGCAAGTTTTCTCTTGGACTCTTCTTTGTCCAGAATGACATAGTAGAGAGCGGTGAAAAATTCCTGAAAGCTGAGATGCATAAAACTGAACACCGTCTCCTGGCTGATTCTTCTTTTAAAGAGGAACTTGCAAAGAAACGGATTGCCAACAGGATCTGAAATTGTTTCATAAACAGTTCTTTCATCCAACAAGACTTGTTTTTCCAGTATCCCTCTCTCTGCCAGCTGACCCAGACTTATCAGCAGGCTCGGGACAGACTGACTCTGACCCTGGCAGTGATGCTCCAATAGAGTGGACACAAAGTCAATGTAGATGGAGGTGGTGGTTTCCAGTCCACTTGTTACATCCATACCAATTTTGAAACGTTCCTTGATAGTTGTGCAGACGATCCAACAGATGACAGGGATGGAGCAGGTAGTGAAGaggttttcatttgttttcacaaaCGTGAAAGCCCTTCTGAAAAGTTCCTCATCCTGAAAGAACTTCTGGAAGTACTCCTCCACCCCCTTCTCAGAGAAGCCCATAATCTCAGAGAAACGCTGAGGTCCTTTGAGCAGTTTACTCAGTATGTCTGTAGCTGTTGATCTGGAGGTGACCAGCAAGAAGGACTCTGGCATGATGTGACCTTTCAGCAGGGCACAAAGAGTGACCTCAGGTGAGGCTTTCTGAATCACATCAGTGTGAGGTGGCATGTAATAAATGTCCCGTGTGAGTTTCAGCTCATCAAATCCATCAATGATGAAAAGCACCTTCTCTGGTGACCGCTGCAGTATCTGTGAGATCTGATCCGATGTTAAACTGCAGCTGTAGCTCAAGATCTCCACCAAACTCTTTCTGCCAGAAATGcgatttatttctttacactTCAAGTGGAACACAATATCAAACCGCTCTTTGTAGATGTCACCAGACGCCCAGTCCAGCATGATCTTCTGTACAGCTAAGGTCTTCCCATTGCCTGAATTTCCCTGCAGTATGACAGCACTGGGGCTGATCCCATGGTTATCTGGGTTGAACAGAGAGTTCAGGTGGGAAGATCCATTACTGTCCCTGGAGTTGAGGACCTGCTGGAAGTTCTCTCCACTGGAGCGGagctcttcttctctctcttgttGATCTCTATGTCTCTGAAGAATCAGAGGTTGTGTGAAGCGCTCAGACAGCAGCACTTGTTCGCCAGGCAGTGAGTTATATTCGGTCACATACTGATAGTCACTGCAGATCCGTGTCTTATGTTTGAAAATCAATGATCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20642 lncRNA upstream 967 21150658 ~ 21151136 (+) True G13994
TU20641 lncRNA upstream 2096 21149221 ~ 21150007 (+) True G13993
TU20640 lncRNA upstream 3591 21148180 ~ 21148512 (+) True G13992
TU20610 lncRNA upstream 185875 20961693 ~ 20966228 (+) True G13976
TU20620 lncRNA upstream 194967 20955935 ~ 20957136 (+) True G13980
TU20627 lncRNA downstream 12306 21166088 ~ 21168887 (+) True G13983
TU21039 lncRNA downstream 188589 21342371 ~ 21346101 (+) True G14234
TU21010 lncRNA downstream 212026 21365808 ~ 21370499 (+) True G14212
TU21083 lncRNA downstream 379463 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 403062 21556844 ~ 21557398 (+) True G14285
XM_043255893.1 mRNA upstream 6813 21131009 ~ 21145290 (+) False epc1b
XM_043255881.1 mRNA upstream 6813 21133610 ~ 21145290 (+) True epc1b
XM_043255886.1 mRNA upstream 6813 21133612 ~ 21145290 (+) False epc1b
XM_043255904.1 mRNA upstream 21774 21123039 ~ 21130329 (+) True LOC122356829
XM_043255911.1 mRNA upstream 29349 21116470 ~ 21122754 (+) True itgb1b.2
XM_043260565.1 mRNA downstream 31427 21185209 ~ 21204873 (+) True arhgap12a
XM_043218333.1 mRNA downstream 73541 21227323 ~ 21246000 (+) False nlrb5
XM_043218330.1 mRNA downstream 74857 21228639 ~ 21246000 (+) True nlrb5
XM_043218349.1 mRNA downstream 74857 21228639 ~ 21246000 (+) False nlrb5
XM_043218341.1 mRNA downstream 74857 21228639 ~ 21246000 (+) False nlrb5
TU20478 other upstream 647880 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 666885 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 679487 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 722758 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 3335339 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 10160 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 10515 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 153625 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 183900 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 183900 21337682 ~ 21361708 (+) False G14211

Expression Profile