RNA id: TU21039


Basic Information

Item Value
RNA id TU21039
length 2901
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G14234
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21342371 ~ 21346101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacaaaattcagATATGTAAACATCTGTGCTCACCTCCTGGATTCCTGCGGAGGATTAATTTACGGATCTCATCATACACAAAGATTAGCAAACTGTACGGGAAAGCACAGAACCACCACATAATCCTGTAAAAGGAATAAGAAAAGGAGAAAGGAAAAGGTGAGGACAGGAGGAGCAGAGAACATAAGCTCTTCTAAGGtgtagaaatgtgtgtgtgtgtgtgcgtgtgcgtgtgtctctTACTTAAGTGGGTACATCCTGAGGGCAATGTCCATGCCGGGGCAGTAGGACAGGAAGGCTGCCAGAGCCGTCTCGGTAAACAGCCCGAAAATGAGAATCCTATTACTGTAAGTGCACAGGTTAGAGAATAGCCTTTAACAGAGGCGTATGCAAATATCAAACTCTTGAATGCgttcacaaacacatacacatactgaCTTCATGCCCTGTTGGAAGACGGAGTTCCTGCGTGTCTTGCAGATAATGAGGTCGGCCCACTGCACCACCACAATGCTGACAAAGAACGACGTGTGACAGGTGAACTCGATGATCTTACGCTGCTCGTAAGTCtgaaacatacatatttaaataaatacataatgaaatacaaacatttaaaaaattgcttttgtaaACTGCACAGAATATGTGGTAATggttgaataataataattaaaaaaggtcTAATAATTAGGAGTTTAAACctgttaaatatgaaaaactatGAGTTACAAATATGTTTTGGTAAGAATATGCCCCCCCAAACGACTATTGGAATTCACTGTGTAAATTATCTTGCACAAATTTATCAAAATTAATTCCATTATTAATCACTATCGCATAAACTAATCACAAATAGGTTCCTAATCACATAATCCTATTTGagttattgattttaattggttttaattactgactagtatattttaaaataaagtattacttttattaagcaagcacatattaaaatgatcaaatgtgacagtaaagccctttacattgttacaaaaatttattcaaataaatgtcgtTCTTTTGAACAACTGTTTTTTAAAGCGGCACAACAGTTTTTCAGGATAACGATAAGAAGTGTTTCTCGAGAAAGATCATGTGagactgaagactagagtaatgatacTCACAATTCAgattcagaaatatattttaataacagaaaacagctgaaagaaatgtgtgtgtgtgtgtttacccaTTGCTGTCCATAGGCATCTTCCAGGTCATTAACGACACGATCATCCCAATCCAGCCGAATTCCCAACAGCGTCTGAGGCAGAAAGCCGTTCTCAGCCATGATCACAAAATAGGTGAAGAATCCTCCCAGTGCCTGAATCATACCTACACACAAAAAGCCCAGATACATAAACAATTGTAATTGCTTTTCCTGCAGAgcataaaaagctattttattcACAACATTAATCAGAAGCACAGAtttctaaagtgtttttttcattgacaCTTATAGTGCAAAATCTATTTCTGTTTGTAAAATAAGTTGCATGATTACTGAGGATAAAAAGGTGTTTGTACTTAATCAACACCATCCTGTATTGCACACAAgttgttaaaaacagtttttttctttttttatcatgtcTTCTCTTGCCCAGGGCAACAAGTGAACCTAGTGACCCATCACAAAATAAGTGCATGATGCCTGTGATGTTCAGCTGTTTGCACAAAGTAATTCTTCACGGAACCACAAAGTTTACAAGAATTATAAACTATAAAGGTCATGCGTGTGCGTTCGCTGATATCTGTGTGCCAGTGCACTTGAGGCTGACCGATCTGTCCGTAAGCCATGCTGATGAGCCTCTCATTCACCAGCTTGTCAGTTTTGGGGTTTCGGGGCTGACGCTTCATAATGTCACTCTCTGCCGACTCATATGCCAGAGAGATCGCAGgaacctgagagagagagtgagaatgATGACGGTGATGACAAAGATGctcacatatgtgtgtgtgtgtaatggtcTGGTGTCTGGTGCCCGAGGGTAGTATCACACTTGACAGGAATTGGAAGTAAGACTGAATGCGCacaagtgtgagtgtgtataaCACACCATGTCAGTGCCAAGGTCGATGCAGAGGATAGTGACGGTGCCCAGAGGCAGCGGCACACTGGCGATGATGAAGAGCAGGAAAGGTGTGATCTCTGGGATGTTACTGGTCAGTGTGTACGCGATCGACTTCTTCAGGTTATCAAAGATCAGACGACCTAAAACAcaccatttattttttgactaaatattacatatactgCAGACCAGTTCAATTAGAAAtttgaaagagagaaagcaagGAAAATGTGCAATGCTTCATTTCTTTTGTCCTAATACTTAATATTCCTTCGGTGTCTTACCCTCTTCCACCCCTGTAACAATTGAGGCAAAGTTGTCGTCCAGCAGGATCATGTCAGCAGCTTGCTTGGAGACGTCTGAGCCAGCGATTCCCATGGCAACGCCAATGTCAGCCTTCTTCAGAGCAGGGGAGTCATTCACcctgtcTCTGGCAGCCCTCTACGATGATGAGTTTTTGTTGAGGTGAAGTGCGAGCAAACACGATCTCTGTGTGGTTCCTCAGAATATCATCCAGATACTCTGAGCTCATGTCCTTCAAGTCTGAACCATGAATCACACAGGCCTTAGCGTCTCtgaaacgcacacacaaacacacacacatatgcacccAGACTCTCAAGCAAACACTCAAAAGAGACAGATTCGCACACACAGACCGTGGATTGACTTGGCTCAGAGGTATATTAAGTCTTTCGGCGATATCCTCCACTGTCTCGTTGCCCTCAGAGATAATGCCCACGCCTTTAGCAATGGCCTTGGCGGTTATAGGATGGTCACCTGTTACCATGATAA

Function

GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20627 lncRNA upstream 173484 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 188589 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 191235 21150658 ~ 21151136 (+) True G13994
TU20641 lncRNA upstream 192364 21149221 ~ 21150007 (+) True G13993
TU20640 lncRNA upstream 193859 21148180 ~ 21148512 (+) True G13992
TU21010 lncRNA downstream 19707 21365808 ~ 21370499 (+) True G14212
TU21083 lncRNA downstream 187144 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 210743 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 370670 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 373817 21719918 ~ 21720575 (+) True G14316
XM_043218333.1 mRNA upstream 96371 21227323 ~ 21246000 (+) False nlrb5
XM_043218330.1 mRNA upstream 96371 21228639 ~ 21246000 (+) True nlrb5
XM_043218349.1 mRNA upstream 96371 21228639 ~ 21246000 (+) False nlrb5
XM_043218341.1 mRNA upstream 96371 21228639 ~ 21246000 (+) False nlrb5
XM_043260565.1 mRNA upstream 137498 21185209 ~ 21204873 (+) True arhgap12a
XM_043254496.1 mRNA downstream 45017 21391118 ~ 21397540 (+) True zgc:152670
XM_043254497.1 mRNA downstream 45017 21391118 ~ 21397540 (+) False zgc:152670
XM_043219271.1 mRNA downstream 77725 21423826 ~ 21462693 (+) True kcnab1b
XM_043219247.1 mRNA downstream 116697 21462798 ~ 21474564 (+) True pask
XM_043219257.1 mRNA downstream 116698 21462799 ~ 21474564 (+) False pask
TU20649 other upstream 177549 21163942 ~ 21164822 (+) True G13998
TU20650 other upstream 177549 21164297 ~ 21164822 (+) False G13998
TU20478 other upstream 838148 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 857153 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 869755 20467268 ~ 20472616 (+) False gbp2
TU21079 other downstream 135575 21481676 ~ 21482318 (+) False LOC122354659
TU21151 other downstream 369254 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 514790 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 582646 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1345150 22691251 ~ 22695330 (+) True fcer1gl

Expression Profile