RNA id: TU21079



Basic Information


Item Value
RNA id TU21079
length 643
RNA type TUCP
GC content 0.52
exon number 1
gene id LOC122354659
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21481134 ~ 21482642 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGGTTTTATACAGCTCTGGCATGCTAAGCATTACAGCAATGGTGCTGGATACCTGCTTTGCGGTGTTAGCCCCCTTTCACTACCTGGCACTGTGGCCTGTGTCACGGACCTACGGAGCAATTGCGGCAATCTGGATCATCTCTGTCTTCTTCCCTGCAGCAGCTGTTGGCATGTTTTTGTGGTACCACAGTATGGCTCCCTGCGCCCTCCACCTCTGTTCCCTTCCTTTGCTGATGGTTTTAACCGTAAGCCACTTTCGCCCACTCCACGTCTCCATGCTGCTGGCGGTCACGGGTATCATTTTCATCCTCCTCCTGGTGTTGTCTGGTTACCTCGTCCTCTACTTTTGTACCCGTAGTTCGGGCGTGTGGAAAGGAGTGACCCCGCCTCGTGCTAGAGGAACATTTCTCATCCATTATCTCCACTTGTTCCTGGCTTTCTGTCCCCTGCTGGTTTTGATGATCGAGCTGATGCTTTTCCAAAACAGTGAGGCGATGGACCCCAAAGCAAGCTTGTGGATGTCCTTGGTCGTGTGTAACGTCTTACTCATCCTGCCCAAAGCCTTAGCGCCGTACCTGTATGGGCTCCGTTATAGAGAACTGTGCAACTTGCTGTTCCAGTTCTTTCACCTCAACAGGCCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21010 lncRNA upstream 111177 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 135575 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 312789 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 327894 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 330540 21150658 ~ 21151136 (+) True G13994
TU21083 lncRNA downstream 50927 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 74526 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 234453 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 237600 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 328611 21810929 ~ 21812903 (+) True LOC122359002
XM_043252907.1 mRNA upstream 810 21477659 ~ 21480866 (+) True LOC122354646
XM_043252921.1 mRNA upstream 4152 21474611 ~ 21477524 (+) True mterf4
XM_043219247.1 mRNA upstream 7112 21462798 ~ 21474564 (+) True pask
XM_043219257.1 mRNA upstream 7112 21462799 ~ 21474564 (+) False pask
XM_043219271.1 mRNA upstream 18983 21423826 ~ 21462693 (+) True kcnab1b
XM_043217763.1 mRNA downstream 1461 21483779 ~ 21501610 (+) True klhl24a
XM_043217320.1 mRNA downstream 21882 21504200 ~ 21532284 (+) False yeats2
XM_043217338.1 mRNA downstream 21882 21504200 ~ 21532284 (+) False yeats2
XM_043217329.1 mRNA downstream 22042 21504360 ~ 21532284 (+) True yeats2
XM_043217409.1 mRNA downstream 75827 21558145 ~ 21619872 (+) True ece2a
TU21005 other upstream 119968 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 119968 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 119968 21337682 ~ 21361708 (+) False G14211
TU20649 other upstream 316854 21163942 ~ 21164822 (+) True G13998
TU20650 other upstream 316854 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 233037 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 378573 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 446429 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1208933 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 2062788 23545106 ~ 23547974 (+) True G14831

Expression Profile