RNA id: TU21112


Basic Information

Item Value
RNA id TU21112
length 285
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G14285
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21556844 ~ 21557398 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTGATGTGAGAGGGAAACTGTTTAACAGATAGCACATCTTGAACAACATACTGGTTAATAGCACCAGACTTCACGAGATCGTCCAAACAAATCGGTACAATAAAATCCCACGACATCTCTGCACGCCTAAAAAAAAAGACGACTTTACTCCGACCAAATCCTGCCTAGAAGAACTAACCCGTAGAAAATGGACTGAACGGTTTGAGTCGCGGCTTTGAATTTCTCACAGCGCCCGCCAAAGGAAGTACGCCATCACTCCGCCCACACACAAGCCACGCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21010 lncRNA upstream 186345 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 210743 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 387957 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 403062 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 405708 21150658 ~ 21151136 (+) True G13994
TU21152 lncRNA downstream 159373 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 162520 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 253531 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 291809 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 294506 21851904 ~ 21852835 (+) False LOC122327294
XM_043217320.1 mRNA upstream 24560 21504200 ~ 21532284 (+) False yeats2
XM_043217338.1 mRNA upstream 24560 21504200 ~ 21532284 (+) False yeats2
XM_043217329.1 mRNA upstream 24560 21504360 ~ 21532284 (+) True yeats2
XM_043217763.1 mRNA upstream 55234 21483779 ~ 21501610 (+) True klhl24a
XM_043252934.1 mRNA upstream 74202 21481134 ~ 21482642 (+) True LOC122354659
XM_043217409.1 mRNA downstream 747 21558145 ~ 21619872 (+) True ece2a
XM_043217417.1 mRNA downstream 944 21558342 ~ 21619872 (+) False ece2a
XM_043262118.1 mRNA downstream 74632 21632030 ~ 21637918 (+) True alg3
XM_043262117.1 mRNA downstream 95342 21652740 ~ 21673600 (+) True prss56
XM_043223826.1 mRNA downstream 119046 21676444 ~ 21681888 (+) True chrng
TU21079 other upstream 74526 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 195136 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 195136 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 195136 21337682 ~ 21361708 (+) False G14211
TU20650 other upstream 392022 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 157957 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 303493 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 371349 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1133853 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1987708 23545106 ~ 23547974 (+) True G14831

Expression Profile