RNA id: TU21151


Basic Information

Item Value
RNA id TU21151
length 509
RNA type TUCP
GC content 0.40
exon number 4
gene id ccl20a.3
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21714683 ~ 21716290 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGACTCTTGCTCTGAAGATCTCAAACACGCTGACAGAGACGATGACTCGAACCTCAGTTACAGCGATGGTGCTGCTGGTTGCAGCTCTCAGCGTGCTCTGTGCAGACGCCTCAGCTTTGTCATGTTGCAGAAAGTATACCAAAGGACAGATACCAATGGCAATCATCAAAGGATATTCCATTCAGACTATGACAAGAAACTGTCACATAGACGCTGTCATATTCCACACGAAAGGAGGCAGGAACGTTTGCACGGACCCCTCCAAAATCTGGGTGATGGAGAGCATCCGTAAACTGAAggaaaaagTGCAAGTAATCagcagaaaacattcaaaagtctAACTTTACAGCTTCTGCGACTAAACAGATGTTACTACATGGAGGAGGATCTATTTCTTTATGGAATTTGCATATTTACtttgcatatttgtatatgcatgttatttttatactgctacactgctttttttaattaaatgcattaaaataattttctatgtACAGCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21083 lncRNA upstream 94258 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 157957 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 344856 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 369254 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 546468 21166088 ~ 21168887 (+) True G13983
TU21152 lncRNA downstream 484 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 3631 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 94642 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 132920 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 135617 21851904 ~ 21852835 (+) False LOC122327294
XM_043254267.1 mRNA upstream 10461 21702091 ~ 21704894 (+) True LOC122355713
XM_043254274.1 mRNA upstream 10461 21702094 ~ 21704894 (+) False LOC122355713
XM_043223836.1 mRNA upstream 27784 21682031 ~ 21687571 (+) True LOC122328123
XM_043223839.1 mRNA upstream 27784 21682031 ~ 21687571 (+) False LOC122328123
XM_043223826.1 mRNA upstream 33467 21676444 ~ 21681888 (+) True chrng
XM_043219111.1 mRNA downstream 38118 21754405 ~ 21793590 (+) True camsap2b
XM_043259016.1 mRNA downstream 78401 21794688 ~ 21809332 (+) False wdr47a
XM_043259036.1 mRNA downstream 78638 21794925 ~ 21809332 (+) True wdr47a
XM_043259027.1 mRNA downstream 78638 21794925 ~ 21809332 (+) False wdr47a
XM_043259049.1 mRNA downstream 98913 21815200 ~ 21819162 (+) True LOC122358999
TU21079 other upstream 233037 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 353647 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 353647 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 353647 21337682 ~ 21361708 (+) False G14211
TU20649 other upstream 550533 21163942 ~ 21164822 (+) True G13998
TU21370 other downstream 144604 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 212460 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 974964 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1828819 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 2020764 23737051 ~ 23737122 (+) True trnaw-cca_1

Expression Profile