RNA id: TU21370


Basic Information

Item Value
RNA id TU21370
length 552
RNA type TUCP
GC content 0.31
exon number 1
gene id G14471
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21860891 ~ 21861442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggcgtggtattggccaggtctggcggcgtgtgacgaggcacacctgaaggggatttagccttgtcaccgccgccgttaaatgccctgcgcgcctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgtgatggacctcaccccgccgtccgagaagcgcgtcgtgggacctccgtagtccaggctgtgagcacacagctcatcccactctgccgccggagcaaagaaacgacggagacgccgcggaagaagccgccgcccctcgcgccccgggccagaaaaaggggagcgcgtgcgaccgccggactccgccccttacctggacccttcccccctggaacacggcctcaaccttcactttccccgcggcacgacgaggacaccagatccccccttttatttggacacttttcccatggacactttattttgtattattattattttgtcaataaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgctggctcctcccgtcacaat

Function

GO:

id name namespace
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21368 lncRNA upstream 8056 21851904 ~ 21852835 (+) False LOC122327294
TU21366 lncRNA upstream 10822 21849207 ~ 21850069 (+) False LOC122327294
XR_006252672.1 lncRNA upstream 47988 21810929 ~ 21812903 (+) True LOC122359002
TU21153 lncRNA upstream 140316 21719918 ~ 21720575 (+) True G14316
TU21152 lncRNA upstream 142899 21716771 ~ 21717992 (+) True G14315
TU21373 lncRNA downstream 4296 21865738 ~ 21866839 (+) False fndc7a
TU21375 lncRNA downstream 33166 21894608 ~ 21895131 (+) True G14476
TU21376 lncRNA downstream 33729 21895171 ~ 21895478 (+) True G14477
TU21388 lncRNA downstream 52078 21913520 ~ 21914967 (+) True G14484
TU21389 lncRNA downstream 52078 21913520 ~ 21915028 (+) False G14484
XM_043222534.1 mRNA upstream 7884 21843575 ~ 21853007 (+) True LOC122327294
XM_043259004.1 mRNA upstream 33659 21818882 ~ 21827232 (+) True nlrp1
XM_043259049.1 mRNA upstream 41729 21815200 ~ 21819162 (+) True LOC122358999
XM_043259016.1 mRNA upstream 51559 21794688 ~ 21809332 (+) False wdr47a
XM_043259036.1 mRNA upstream 51559 21794925 ~ 21809332 (+) True wdr47a
XM_043222546.1 mRNA downstream 35234 21896676 ~ 21911669 (+) True fndc7rs1
XM_043253209.1 mRNA downstream 67855 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA downstream 67855 21929297 ~ 22026087 (+) False gpc5c
XM_043263870.1 mRNA downstream 183426 22044868 ~ 22105101 (+) True gpc1b
XM_043218532.1 mRNA downstream 272912 22134354 ~ 22326172 (+) True LOC122324242
TU21151 other upstream 144604 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 378573 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 499183 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 499183 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 499183 21337682 ~ 21361708 (+) False G14211
unassigned_transcript_253 other downstream 67305 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 829809 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1683664 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1875609 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 2074479 23935921 ~ 23938943 (+) True LOC122323670

Expression Profile