RNA id: TU21375


Basic Information

Item Value
RNA id TU21375
length 524
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G14476
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21894608 ~ 21895131 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agtctgtggttgttctatatgcaagcatcagtgccttgaacttgatgcgagctgcaatcggtagccaatgtaaggagataaagagaggtgtaacatgggttctcttgggctcattgaataccagccgtgccgctgcattctgaatcatttgtagaggttttattgtgtttgatggaagtccagccagaagagcattgtagtagtccagtctagaaatgacaagggcctggacaagtagctgtgcagcttgctctgttagaaagggcctgatctttctgatgttgtgtaatgcaaacctgcaggatcgagcagtctttgcaatgtgatctttgaaggttagttggtcgtcgaggattacaccaagatttctgactgaggttgatggggtaattgacgaagaacctagctggatggtgaagtcatgctgtgtagttggagtggcagggaatacaagcagctcagtctttgtcaggttgagctgtaggtggtactcttgcatccatgccgagatgtccgccaggcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21373 lncRNA upstream 27769 21865738 ~ 21866839 (+) False fndc7a
TU21368 lncRNA upstream 41773 21851904 ~ 21852835 (+) False LOC122327294
TU21366 lncRNA upstream 44539 21849207 ~ 21850069 (+) False LOC122327294
XR_006252672.1 lncRNA upstream 81705 21810929 ~ 21812903 (+) True LOC122359002
TU21153 lncRNA upstream 174033 21719918 ~ 21720575 (+) True G14316
TU21376 lncRNA downstream 40 21895171 ~ 21895478 (+) True G14477
TU21388 lncRNA downstream 18389 21913520 ~ 21914967 (+) True G14484
TU21389 lncRNA downstream 18389 21913520 ~ 21915028 (+) False G14484
TU21457 lncRNA downstream 567903 22463034 ~ 22463853 (+) False LOC122327302
TU21455 lncRNA downstream 572729 22467860 ~ 22472603 (+) True G14532
XM_043219847.1 mRNA upstream 27209 21857212 ~ 21867399 (+) True fndc7a
XM_043222534.1 mRNA upstream 41601 21843575 ~ 21853007 (+) True LOC122327294
XM_043259004.1 mRNA upstream 67376 21818882 ~ 21827232 (+) True nlrp1
XM_043259049.1 mRNA upstream 75446 21815200 ~ 21819162 (+) True LOC122358999
XM_043259036.1 mRNA upstream 85276 21794925 ~ 21809332 (+) True wdr47a
XM_043222546.1 mRNA downstream 1545 21896676 ~ 21911669 (+) True fndc7rs1
XM_043253209.1 mRNA downstream 34166 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA downstream 34166 21929297 ~ 22026087 (+) False gpc5c
XM_043263870.1 mRNA downstream 149737 22044868 ~ 22105101 (+) True gpc1b
XM_043218532.1 mRNA downstream 239223 22134354 ~ 22326172 (+) True LOC122324242
TU21370 other upstream 33166 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 178321 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 412290 21481676 ~ 21482318 (+) False LOC122354659
TU21007 other upstream 532900 21337682 ~ 21361708 (+) True G14211
unassigned_transcript_253 other downstream 33616 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 796120 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1649975 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1841920 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 2040790 23935921 ~ 23938943 (+) True LOC122323670

Expression Profile